Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SMA_0470 Genome accession   HE613569
Coordinates   482037..482699 (+) Length   220 a.a.
NCBI ID   CCF01761.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477037..487699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_0465 ppiB 477147..478547 (+) 1401 CCF01756.1 Streptococcal lipoprotein rotamase A; Peptidyl-prolyl cis-trans isomerase -
  SMA_0466 yugI 478547..478903 (+) 357 CCF01757.1 General stress protein 13 -
  SMA_0467 cysK 479023..479952 (-) 930 CCF01758.1 Cysteine synthase -
  SMA_0468 yvyE 480056..480682 (-) 627 CCF01759.1 Protein co-occurring with transport systems (COG1739) -
  SMA_0469 comFA/cflA 480739..482040 (+) 1302 CCF01760.1 ComF operon protein A, DNA transporter ATPase Machinery gene
  SMA_0470 comFC/cflB 482037..482699 (+) 663 CCF01761.1 ComF operon protein C Machinery gene
  SMA_0471 yhbH 482775..483323 (+) 549 CCF01762.1 Ribosomal subunit interface protein -
  SMA_0472 - 483379..483546 (-) 168 CCF01763.1 Hypothetical protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25869.06 Da        Isoelectric Point: 9.2880

>NTDB_id=20342 SMA_0470 CCF01761.1 482037..482699(+) (comFC/cflB) [Streptococcus macedonicus ACA-DC 198]
MICLLCEQEFSKKEQFLNLILMKKDDNGVCLECQKTFERIGDIHCPNCYRNGFAQQCLDCQSWEKKHHHVFHEALFTYNS
SMKDYFSKYKFQGDILLSHVFSKEIKQALKKYKNYTVVPVPISPKRLKERQFNQVTALLQAAKISYEDLLIKIEIRKQSD
KTRKERLETLNPFSFKNISKVPENILIIDDIYTTGATLKGIYQLFYENGAKNVKSFTIVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=20342 SMA_0470 CCF01761.1 482037..482699(+) (comFC/cflB) [Streptococcus macedonicus ACA-DC 198]
ATGATTTGCCTGCTCTGCGAACAAGAATTTTCCAAAAAAGAACAATTTTTAAACCTTATCTTAATGAAAAAAGATGACAA
CGGCGTGTGTCTGGAGTGTCAAAAAACATTTGAAAGAATAGGAGACATTCATTGCCCAAACTGTTACCGCAACGGCTTTG
CTCAGCAATGCTTAGATTGTCAATCATGGGAAAAAAAGCATCACCATGTGTTTCATGAAGCACTTTTTACTTACAACTCT
TCAATGAAAGACTATTTTTCAAAATATAAATTTCAAGGAGATATTCTTTTAAGTCACGTTTTTTCAAAGGAAATCAAACA
AGCATTAAAAAAATATAAAAACTACACCGTTGTTCCAGTTCCCATAAGTCCAAAACGGCTAAAAGAAAGACAATTTAACC
AAGTAACAGCACTTTTACAAGCAGCTAAAATCTCCTATGAAGACTTACTAATCAAGATAGAAATCAGAAAACAGTCCGAT
AAAACACGAAAGGAGCGCCTAGAAACTCTCAATCCTTTTTCTTTTAAAAATATTTCAAAAGTGCCAGAAAATATTTTGAT
TATTGATGATATTTACACAACTGGCGCTACTTTAAAGGGAATATACCAGCTTTTCTATGAAAATGGCGCAAAAAATGTAA
AAAGTTTTACGATTGTGCGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

50

100

0.5
  comFC/cflB Streptococcus pneumoniae TIGR4

49.545

100

0.495
  comFC/cflB Streptococcus pneumoniae Rx1

49.545

100

0.495
  comFC/cflB Streptococcus pneumoniae D39

49.545

100

0.495
  comFC/cflB Streptococcus pneumoniae R6

49.545

100

0.495
  comFC/cflB Streptococcus mitis SK321

49.091

100

0.491
  comFC Bacillus subtilis subsp. subtilis str. 168

34.934

100

0.364

Multiple sequence alignment