Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   DN94_03370 Genome accession   CP007565
Coordinates   624466..625176 (+) Length   236 a.a.
NCBI ID   AHX74755.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 619466..630176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_03340 - 619553..620572 (+) 1020 AHX74750.1 hypothetical protein -
  DN94_03345 - 620738..621304 (+) 567 AHX74751.1 peptidase -
  DN94_03350 - 621353..622003 (-) 651 AHX74752.1 glutamine ABC transporter permease -
  DN94_03355 - 622015..622710 (-) 696 AHX74753.1 glutamine ABC transporter permease -
  DN94_03365 - 623371..624126 (-) 756 AHX74754.1 ABC transporter -
  DN94_03370 vicR 624466..625176 (+) 711 AHX74755.1 PhoP family transcriptional regulator Regulator
  DN94_03375 vicK 625169..626518 (+) 1350 AHX74756.1 histidine kinase Regulator
  DN94_03380 vicX 626522..627331 (+) 810 AHX74757.1 metallohydrolase Regulator
  DN94_03385 - 627334..627687 (+) 354 AHX74758.1 membrane protein -
  DN94_03390 - 627863..628549 (+) 687 AHX74759.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27037.86 Da        Isoelectric Point: 4.9080

>NTDB_id=20296 DN94_03370 AHX74755.1 624466..625176(+) (vicR) [Streptococcus agalactiae strain 138spar]
MKKILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQHAEFQPDLIILDLMLPELDGLEVAKEVRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIETAVAEESAQNASSDITIGELQILPDAFIAKKRGEEIE
LTHREFELLHHLATHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMKSYE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=20296 DN94_03370 AHX74755.1 624466..625176(+) (vicR) [Streptococcus agalactiae strain 138spar]
ATGAAAAAAATACTTATCGTTGATGATGAAAAACCAATTTCAGATATTATCAAATTTAATTTAACCAAAGAAGGATATGA
GACGGCGACAGCTTTCGATGGCCGTGAAGCTTTAGTACAACATGCAGAATTTCAACCAGATTTAATCATTTTGGATTTAA
TGCTCCCTGAACTAGATGGTTTAGAAGTGGCTAAGGAAGTTCGTAAAACCAGCCATATTCCTATTATTATGCTTTCTGCA
AAAGATAGTGAGTTTGACAAAGTCATTGGTTTAGAAATCGGTGCAGACGATTATGTTACTAAACCTTTTTCAAATCGTGA
ACTTTTGGCACGGGTCAAAGCACATTTACGACGTACTGAAAATATTGAAACAGCTGTAGCAGAAGAAAGTGCTCAAAATG
CTTCTTCGGATATTACTATTGGTGAGTTGCAAATTTTACCAGACGCCTTTATTGCTAAGAAACGTGGCGAAGAAATTGAA
TTAACGCACCGAGAATTTGAATTACTTCACCATTTAGCGACACATATCGGACAAGTCATGACACGCGAACATTTATTGGA
AACAGTTTGGGGATATGATTATTTTGGAGATGTCCGTACAGTTGATGTGACGGTGAGACGTTTACGTGAAAAGATTGAAG
ATACTCCTGGTCGTCCAGAATATATTTTGACTCGACGTGGTGTAGGTTATTACATGAAGTCTTATGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

88.559

100

0.886
  micA Streptococcus pneumoniae Cp1015

77.778

99.153

0.771
  covR Lactococcus lactis subsp. lactis strain DGCC12653

46.983

98.305

0.462
  covR Streptococcus salivarius strain HSISS4

44.635

98.729

0.441
  scnR Streptococcus mutans UA159

38.559

100

0.386

Multiple sequence alignment