Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DN94_03380 Genome accession   CP007565
Coordinates   626522..627331 (+) Length   269 a.a.
NCBI ID   AHX74757.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 621522..632331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_03355 - 622015..622710 (-) 696 AHX74753.1 glutamine ABC transporter permease -
  DN94_03365 - 623371..624126 (-) 756 AHX74754.1 ABC transporter -
  DN94_03370 vicR 624466..625176 (+) 711 AHX74755.1 PhoP family transcriptional regulator Regulator
  DN94_03375 vicK 625169..626518 (+) 1350 AHX74756.1 histidine kinase Regulator
  DN94_03380 vicX 626522..627331 (+) 810 AHX74757.1 metallohydrolase Regulator
  DN94_03385 - 627334..627687 (+) 354 AHX74758.1 membrane protein -
  DN94_03390 - 627863..628549 (+) 687 AHX74759.1 ribonuclease III -
  DN94_03395 - 628557..632096 (+) 3540 AHX74760.1 recombinase RecF -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30372.38 Da        Isoelectric Point: 6.3668

>NTDB_id=20298 DN94_03380 AHX74757.1 626522..627331(+) (vicX) [Streptococcus agalactiae strain 138spar]
MSEIRFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGKTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAS
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=20298 DN94_03380 AHX74757.1 626522..627331(+) (vicX) [Streptococcus agalactiae strain 138spar]
ATGTCAGAAATAAGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATTGACGCTGGTCTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAGCCAGAAGATT
TAGATGCTATACTAGTTACCCACGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCTAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAGGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTAAAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAAGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCACCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.208

100

0.762

Multiple sequence alignment