Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BJN34_RS01890 Genome accession   NZ_CP017757
Coordinates   394989..396380 (-) Length   463 a.a.
NCBI ID   WP_272939540.1    Uniprot ID   -
Organism   Cupriavidus necator strain NH9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 396410..440310 394989..396380 flank 30


Gene organization within MGE regions


Location: 394989..440310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJN34_RS01890 (BJN34_01885) comM 394989..396380 (-) 1392 WP_272939540.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BJN34_RS01895 (BJN34_01890) - 396410..398356 (+) 1947 WP_078195107.1 hypothetical protein -
  BJN34_RS37840 - 398353..400497 (+) 2145 WP_123957858.1 hypothetical protein -
  BJN34_RS01905 (BJN34_01900) - 400499..401092 (+) 594 WP_123957859.1 hypothetical protein -
  BJN34_RS01910 (BJN34_01905) - 401109..402377 (+) 1269 WP_078195110.1 hypothetical protein -
  BJN34_RS01915 (BJN34_01910) - 402540..403376 (-) 837 WP_234824882.1 tetratricopeptide repeat protein -
  BJN34_RS01920 (BJN34_01915) - 403411..406518 (-) 3108 WP_078195111.1 efflux RND transporter permease subunit -
  BJN34_RS37845 - 406542..407222 (-) 681 WP_123957860.1 hypothetical protein -
  BJN34_RS01930 (BJN34_01925) - 407612..409072 (-) 1461 WP_078195113.1 TolC family protein -
  BJN34_RS01935 (BJN34_01930) - 409314..409976 (+) 663 WP_078195114.1 response regulator transcription factor -
  BJN34_RS01940 (BJN34_01935) - 409952..411304 (+) 1353 WP_078195115.1 ATP-binding protein -
  BJN34_RS01945 (BJN34_01940) - 411410..412615 (+) 1206 WP_078195116.1 MFS transporter -
  BJN34_RS01955 (BJN34_01945) - 412734..413042 (-) 309 WP_078195117.1 H-NS histone family protein -
  BJN34_RS01970 (BJN34_01955) - 414256..415578 (+) 1323 WP_078198435.1 IS4 family transposase -
  BJN34_RS01980 (BJN34_01965) - 416780..421369 (+) 4590 WP_078195121.1 AAA domain-containing protein -
  BJN34_RS01985 (BJN34_01970) - 421533..423080 (+) 1548 WP_078195122.1 DUF6035 family protein -
  BJN34_RS01990 (BJN34_0050) - 423473..424501 (+) 1029 WP_206363351.1 hypothetical protein -
  BJN34_RS01995 (BJN34_01975) - 424842..426974 (-) 2133 WP_078195123.1 helix-turn-helix transcriptional regulator -
  BJN34_RS02000 (BJN34_01980) - 427262..427501 (+) 240 WP_206363352.1 hypothetical protein -
  BJN34_RS02005 (BJN34_01985) - 427543..429243 (+) 1701 WP_078195125.1 site-specific DNA-methyltransferase -
  BJN34_RS02010 (BJN34_01990) - 429240..431744 (+) 2505 WP_164704810.1 DEAD/DEAH box helicase family protein -
  BJN34_RS02020 (BJN34_01995) - 432230..433636 (-) 1407 WP_078195127.1 ThiF family adenylyltransferase -
  BJN34_RS02025 (BJN34_02000) - 433633..434379 (-) 747 WP_078195128.1 multiubiquitin domain-containing protein -
  BJN34_RS38235 (BJN34_02005) - 434430..435374 (-) 945 WP_164704811.1 hypothetical protein -
  BJN34_RS02035 (BJN34_02010) - 435539..436129 (+) 591 WP_078195130.1 sigma-70 family RNA polymerase sigma factor -
  BJN34_RS02040 (BJN34_02015) - 436126..436515 (+) 390 WP_078195131.1 hypothetical protein -
  BJN34_RS02045 (BJN34_02020) - 436512..437348 (+) 837 WP_078195132.1 ImmA/IrrE family metallo-endopeptidase -
  BJN34_RS02050 (BJN34_02025) - 437525..437878 (-) 354 WP_206363353.1 helix-turn-helix transcriptional regulator -
  BJN34_RS02055 (BJN34_02030) - 438114..438683 (-) 570 WP_078198438.1 transposase -
  BJN34_RS02060 (BJN34_02035) - 438726..439055 (-) 330 WP_078195133.1 hypothetical protein -
  BJN34_RS02065 (BJN34_02040) - 439266..439616 (+) 351 WP_078195134.1 helix-turn-helix transcriptional regulator -
  BJN34_RS02070 (BJN34_02045) - 440116..440310 (-) 195 Protein_402 magnesium chelatase domain-containing protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49384.72 Da        Isoelectric Point: 7.2298

>NTDB_id=202551 BJN34_RS01890 WP_272939540.1 394989..396380(-) (comM) [Cupriavidus necator strain NH9]
MLRLERFGNNTERMTVNLAPADLPKESGRFDLAIALGILAASGQIPSEALDAHEFAAELSLSGELRPVRGALAMAMGLAR
DNAARAAAGEAPRAFLVAEGNGTEAALIEDLTVHAAATLCQACDHLCPLPDARLPRAMPVLLPASTDRGPDMRDVRGQAQ
ARRAMEVAAAGQHSALLVGPPGTGKSMLAQRLPGLLPPMSLQEALECAAVMSLTPGGFRPALWGQRPCRAPHHTASGPAM
VGGGGNPRPGEISLAHHGVLFLDELPEFDRRVLEVLREPLESGRITIARAAGHADFPACFQFVAAMNPCPCGYLGHPDRP
CRCTPDQVRRYQSRISGPMLDRIDLQVEVPAQDQGEMLDGPPGEPSAAVRVRVLAARERQLARQGKPNNELGGREIEQHC
AMEPQAQALLRGAMTRLAWSARSYFRVLKVARTIADLEGAEVLTAAHVGEAIQYRRALRMAGG

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=202551 BJN34_RS01890 WP_272939540.1 394989..396380(-) (comM) [Cupriavidus necator strain NH9]
ATTCTCCGCCTAGAGCGTTTCGGTAATAATACAGAGCGGATGACCGTCAATCTGGCTCCGGCCGACCTGCCCAAGGAATC
CGGCCGCTTCGACCTGGCCATCGCGCTGGGCATCCTGGCCGCCAGCGGCCAGATCCCGTCCGAGGCGCTGGATGCGCACG
AGTTCGCCGCCGAACTGTCCCTGTCCGGCGAACTGCGCCCCGTGCGCGGCGCGCTGGCCATGGCCATGGGACTGGCGCGC
GACAACGCCGCCCGCGCGGCCGCCGGCGAGGCGCCACGCGCCTTCCTGGTGGCCGAGGGCAACGGCACTGAAGCCGCGCT
GATCGAAGACCTGACCGTGCACGCCGCCGCCACCCTGTGCCAGGCCTGCGACCACCTCTGCCCCCTGCCCGACGCGCGGC
TGCCCCGCGCCATGCCGGTCCTGCTGCCCGCCAGTACGGACCGCGGCCCCGACATGCGCGACGTGCGCGGCCAGGCCCAG
GCGCGCCGGGCCATGGAAGTGGCCGCCGCCGGCCAGCACTCGGCGCTGCTGGTAGGCCCGCCCGGCACCGGCAAGTCGAT
GCTGGCCCAGCGCCTGCCCGGGCTGCTGCCGCCGATGTCGCTGCAGGAAGCCCTCGAGTGCGCCGCGGTCATGAGCCTGA
CACCGGGCGGCTTCCGCCCCGCGCTATGGGGCCAGCGCCCCTGCCGCGCGCCGCACCACACTGCCTCGGGCCCGGCCATG
GTCGGCGGCGGCGGCAACCCGCGCCCCGGCGAGATCTCGCTGGCACACCACGGCGTGCTGTTCCTCGACGAGCTGCCCGA
GTTCGACCGCAGGGTGCTGGAAGTCCTGCGCGAGCCGCTGGAATCCGGCCGCATCACCATCGCCCGCGCCGCCGGCCATG
CCGACTTCCCCGCCTGCTTCCAGTTCGTCGCCGCGATGAACCCCTGCCCGTGCGGCTACCTCGGCCATCCCGACCGCCCC
TGCCGCTGCACGCCCGACCAGGTGCGGCGCTACCAGTCCCGCATCTCCGGCCCCATGCTCGACCGCATCGACCTGCAGGT
GGAAGTGCCCGCGCAGGACCAGGGCGAGATGCTCGACGGCCCGCCCGGCGAACCCAGCGCCGCGGTGCGCGTTCGCGTGC
TGGCCGCGCGCGAGCGCCAGCTGGCCCGCCAGGGCAAGCCCAACAATGAACTGGGCGGACGCGAGATCGAACAGCACTGC
GCGATGGAACCGCAGGCGCAGGCATTGCTGCGCGGCGCGATGACGCGGCTGGCGTGGTCGGCACGCTCGTACTTCCGCGT
GTTGAAGGTGGCCCGCACCATCGCGGACCTGGAGGGCGCGGAGGTCTTGACCGCCGCGCATGTGGGCGAGGCGATCCAGT
ACCGGCGGGCGTTGCGGATGGCGGGCGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(10-84)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(363-455)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(151-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.554

97.408

0.492
  comM Vibrio campbellii strain DS40M4

49.669

97.84

0.486
  comM Haemophilus influenzae Rd KW20

47.826

99.352

0.475
  comM Glaesserella parasuis strain SC1401

47.903

97.84

0.469
  comM Legionella pneumophila str. Paris

46.681

97.624

0.456
  comM Legionella pneumophila strain ERS1305867

46.681

97.624

0.456
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.886

98.92

0.434

Multiple sequence alignment