Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BKP64_RS00405 Genome accession   NZ_CP017715
Coordinates   89913..90182 (-) Length   89 a.a.
NCBI ID   WP_070964480.1    Uniprot ID   A0A1D9GGI7
Organism   Marinobacter salinus strain Hb8     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 84913..95182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP64_RS00380 (BKP64_00380) gloA 85407..85955 (+) 549 WP_070964470.1 lactoylglutathione lyase -
  BKP64_RS00385 (BKP64_00385) - 85965..86918 (-) 954 WP_070964472.1 DMT family transporter -
  BKP64_RS00390 (BKP64_00390) - 86915..87571 (-) 657 WP_070964474.1 LutC/YkgG family protein -
  BKP64_RS00395 (BKP64_00395) - 87568..89007 (-) 1440 WP_070964477.1 LutB/LldF family L-lactate oxidation iron-sulfur protein -
  BKP64_RS00400 (BKP64_00400) - 89004..89783 (-) 780 WP_070973481.1 (Fe-S)-binding protein -
  BKP64_RS00405 (BKP64_00405) comEA 89913..90182 (-) 270 WP_070964480.1 ComEA family DNA-binding protein Machinery gene
  BKP64_RS00410 (BKP64_00410) atzF 90607..92436 (-) 1830 WP_070964484.1 allophanate hydrolase -
  BKP64_RS00415 (BKP64_00415) urtA 92774..94081 (+) 1308 WP_070964487.1 urea ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 89 a.a.        Molecular weight: 9443.87 Da        Isoelectric Point: 7.0105

>NTDB_id=202188 BKP64_RS00405 WP_070964480.1 89913..90182(-) (comEA) [Marinobacter salinus strain Hb8]
MKRTPVIATLVLLFTLLAGFAHAEPTAVNINTADVATLADLNGIGQSKAEAIVAYREANGPFQAPQELANVKGIGERTVE
KNAERLTIK

Nucleotide


Download         Length: 270 bp        

>NTDB_id=202188 BKP64_RS00405 WP_070964480.1 89913..90182(-) (comEA) [Marinobacter salinus strain Hb8]
ATGAAACGTACACCGGTTATCGCCACCCTCGTTCTGTTGTTCACCCTGCTCGCAGGTTTTGCCCACGCTGAGCCAACTGC
AGTGAACATCAACACCGCCGACGTGGCGACCCTTGCCGACCTGAACGGCATTGGCCAGAGCAAGGCGGAGGCGATTGTGG
CCTACCGTGAAGCCAACGGCCCGTTCCAGGCACCGCAGGAGCTTGCCAACGTGAAAGGAATCGGCGAGCGCACCGTTGAA
AAAAATGCCGAGCGCCTGACTATCAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(27-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9GGI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

51.579

100

0.551
  comEA Vibrio cholerae C6706

51.579

100

0.551
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.5

89.888

0.427
  comEA Vibrio campbellii strain DS40M4

41.758

100

0.427
  comEA Vibrio parahaemolyticus RIMD 2210633

53.226

69.663

0.371
  comEA Legionella pneumophila strain ERS1305867

55

67.416

0.371
  comEA Legionella pneumophila str. Paris

55

67.416

0.371

Multiple sequence alignment