Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   AB478_RS07995 Genome accession   NZ_CP017679
Coordinates   1598781..1599227 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN007883     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593781..1604227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB478_RS07965 (AB478_07765) gcvPA 1594707..1596053 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  AB478_RS07970 (AB478_07770) gcvT 1596073..1597164 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  AB478_RS07975 (AB478_07775) - 1597323..1597847 (-) 525 WP_001015116.1 shikimate kinase -
  AB478_RS07980 (AB478_07780) - 1597837..1597983 (-) 147 WP_001789879.1 hypothetical protein -
  AB478_RS07985 (AB478_07785) comGF 1598080..1598577 (-) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB478_RS07990 (AB478_07790) comGE 1598495..1598794 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  AB478_RS07995 (AB478_07795) comGD 1598781..1599227 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB478_RS08000 (AB478_07800) comGC 1599205..1599516 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  AB478_RS08005 (AB478_07805) comGB 1599530..1600600 (-) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB478_RS08010 (AB478_07810) comGA 1600572..1601546 (-) 975 WP_000697218.1 competence type IV pilus ATPase ComGA Machinery gene
  AB478_RS08015 (AB478_07815) - 1601598..1602221 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  AB478_RS08020 (AB478_07820) - 1602218..1602547 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  AB478_RS08025 (AB478_07825) - 1602547..1603533 (-) 987 WP_000161315.1 ROK family glucokinase -
  AB478_RS08030 (AB478_07830) - 1603530..1603733 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=201596 AB478_RS07995 WP_001796473.1 1598781..1599227(-) (comGD) [Staphylococcus aureus strain CFSAN007883]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=201596 AB478_RS07995 WP_001796473.1 1598781..1599227(-) (comGD) [Staphylococcus aureus strain CFSAN007883]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment