Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CGL27_RS33365 Genome accession   NZ_CP022545
Coordinates   7732181..7733803 (+) Length   540 a.a.
NCBI ID   WP_078643999.1    Uniprot ID   -
Organism   Streptomyces sp. 11-1-2     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7727181..7738803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGL27_RS33335 (CGL27_33005) lepB 7727917..7729107 (+) 1191 WP_119991637.1 signal peptidase I -
  CGL27_RS33340 (CGL27_33010) lepB 7729154..7729990 (+) 837 WP_078643993.1 signal peptidase I -
  CGL27_RS33345 (CGL27_33015) lepB 7730087..7730857 (+) 771 WP_078643995.1 signal peptidase I -
  CGL27_RS33350 (CGL27_33020) - 7730850..7731380 (+) 531 WP_078643996.1 NUDIX hydrolase -
  CGL27_RS33355 (CGL27_33025) - 7731420..7731728 (+) 309 WP_004944840.1 DUF2469 domain-containing protein -
  CGL27_RS33360 (CGL27_33030) - 7731822..7732181 (+) 360 WP_078643998.1 YraN family protein -
  CGL27_RS33365 (CGL27_33035) comM 7732181..7733803 (+) 1623 WP_078643999.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CGL27_RS33370 (CGL27_33040) dprA 7733803..7735206 (+) 1404 WP_240450724.1 DNA-processing protein DprA -
  CGL27_RS33375 (CGL27_33045) whiG 7735336..7736169 (+) 834 WP_014055202.1 RNA polymerase sigma factor WhiG -
  CGL27_RS33380 (CGL27_33050) - 7736263..7736802 (+) 540 WP_078644001.1 TetR/AcrR family transcriptional regulator -
  CGL27_RS33385 (CGL27_33055) - 7737030..7737716 (-) 687 Protein_6595 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 56104.46 Da        Isoelectric Point: 6.3536

>NTDB_id=201551 CGL27_RS33365 WP_078643999.1 7732181..7733803(+) (comM) [Streptomyces sp. 11-1-2]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLVESRDRVRAAVVNSGGEWPQKKLTVGLSPASVPKGGSG
FDLAVACAVLGAAERVDPREIADLMMIGELGLDGRVRPVRGVLPAVLAASEAGYRQVVVPEQTAAEAALVPGVSVLGVRS
LRQLIAVLTDEPVPEEEETQELGRPDPMLAGLTVPGAGMGTGVAAVPGTGAGRPDMAEVAGQRAARTALEVAAAGGHHLF
LSGPPGAGKTMLAERLPGLLPPLTQQEALEVTAVHSVAGVLPPGQPLVESPPYCAPHHSATMAALVGGGNGLPRPGAVSL
AHRGVLFLDEAPEFSGKALDALRQPLESGHVVVARSAGMMRMPARFLLMLAANPCPCGRYGLVGDVCECSPTTVRRYQAR
LSGPLLDRVDLRVHVEAVSRAELTGARAGAEDSASVAARVREARERAAARLQDTPWRLNSEVPGHELRTRWQPFPGALRE
AERDMERGLLTARGLDRVLRVAWTVADLAGHDRPAAPDIAQALQLRTGLSRGVPVAAGEC

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=201551 CGL27_RS33365 WP_078643999.1 7732181..7733803(+) (comM) [Streptomyces sp. 11-1-2]
ATGGGGTTCGCCCGCACCTGCTCGGTGGCGCTGGTCGGGGTCGAGGGCGTCGTGGTCGAGGTCCAGGCCGATCTGGAGCC
GGGAGTGGCCGCCTTCACCCTTGTCGGGCTGCCCGACAAGAGCCTGGTGGAGAGCCGGGACCGGGTCCGCGCGGCCGTCG
TCAATTCCGGCGGCGAATGGCCGCAGAAGAAGCTCACGGTCGGGCTCAGCCCGGCATCCGTCCCCAAGGGCGGCAGCGGC
TTCGACCTGGCCGTGGCCTGTGCGGTGCTCGGCGCGGCCGAGCGTGTGGATCCGCGTGAGATCGCCGATCTGATGATGAT
CGGGGAGCTGGGCCTGGACGGCCGGGTCCGGCCGGTCCGCGGGGTGCTGCCCGCCGTGCTCGCCGCCTCCGAGGCGGGGT
ACCGCCAGGTCGTGGTTCCCGAGCAGACGGCGGCGGAGGCGGCCCTGGTGCCGGGCGTCTCGGTGCTGGGCGTGCGGAGC
CTGCGCCAGCTGATCGCGGTGCTGACGGACGAGCCGGTGCCCGAGGAGGAGGAGACACAGGAGCTGGGCCGCCCCGATCC
GATGCTGGCGGGGCTCACCGTGCCCGGCGCCGGTATGGGCACCGGTGTCGCCGCCGTGCCCGGGACCGGCGCGGGGCGGC
CCGATATGGCCGAGGTCGCCGGGCAGCGGGCCGCGCGCACCGCCCTGGAGGTAGCGGCCGCGGGCGGGCACCACCTCTTC
CTCAGCGGGCCTCCGGGCGCCGGGAAGACCATGCTGGCCGAGCGGCTGCCGGGGCTGCTGCCGCCGCTCACCCAGCAGGA
GGCCCTGGAGGTCACCGCGGTCCATTCGGTCGCCGGGGTCCTCCCGCCGGGCCAGCCGCTGGTGGAGAGCCCGCCGTACT
GCGCCCCGCATCACTCGGCCACCATGGCCGCGCTCGTCGGCGGGGGAAACGGCCTGCCCAGACCCGGCGCGGTCTCGCTC
GCCCACCGCGGAGTGCTCTTTCTGGACGAGGCTCCCGAGTTCAGCGGGAAGGCGCTGGACGCCCTGCGGCAGCCCCTGGA
GTCGGGGCATGTGGTGGTGGCCCGGTCGGCCGGGATGATGCGGATGCCGGCGCGTTTCCTGCTGATGCTGGCGGCCAACC
CCTGCCCCTGCGGGCGCTATGGGCTGGTGGGCGATGTCTGCGAGTGCTCGCCCACCACGGTCCGCCGCTACCAGGCGAGG
CTGTCGGGGCCGCTGCTGGACCGGGTGGACCTGCGTGTCCATGTCGAAGCGGTGAGCAGGGCCGAGCTCACCGGGGCGCG
TGCCGGGGCGGAGGACAGCGCTTCCGTCGCGGCCCGGGTCCGGGAGGCCCGGGAGCGGGCCGCCGCCCGCCTCCAGGACA
CCCCCTGGCGGCTGAACAGCGAGGTGCCGGGCCATGAGCTGCGCACCCGCTGGCAGCCGTTCCCCGGTGCGCTGCGCGAG
GCCGAGCGCGATATGGAGCGCGGGTTGCTCACCGCCCGAGGGCTCGACCGGGTGCTGAGGGTTGCCTGGACCGTCGCCGA
CCTGGCCGGGCACGACCGGCCCGCGGCGCCGGACATCGCCCAGGCGCTGCAGTTACGCACCGGGCTTAGCCGCGGGGTGC
CGGTCGCGGCGGGGGAGTGCTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(431-526)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.987

97.593

0.4
  comM Vibrio cholerae strain A1552

40.987

97.593

0.4
  comM Legionella pneumophila str. Paris

39.024

98.704

0.385
  comM Legionella pneumophila strain ERS1305867

39.024

98.704

0.385
  comM Acinetobacter baylyi ADP1

39.205

97.778

0.383
  comM Vibrio campbellii strain DS40M4

38.837

98.704

0.383
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

38.388

96.481

0.37
  comM Haemophilus influenzae Rd KW20

37.833

97.407

0.369
  comM Glaesserella parasuis strain SC1401

37.24

97.963

0.365

Multiple sequence alignment