Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SSU05_0060 Genome accession   CP000407
Coordinates   64526..65116 (+) Length   196 a.a.
NCBI ID   ABP89032.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 59526..70116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0057 - 60743..60856 (+) 114 ABP89029.1 hypothetical protein -
  SSU05_0058 - 60909..62432 (+) 1524 ABP89030.1 Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
  SSU05_0059 hexB 62547..64487 (+) 1941 ABP89031.1 DNA mismatch repair enzyme (predicted ATPase) Machinery gene
  SSU05_0060 ruvA 64526..65116 (+) 591 ABP89032.1 Holliday junction resolvasome, DNA-binding subunit Machinery gene
  SSU05_0061 - 65757..66410 (+) 654 ABP89033.1 3-methyladenine DNA glycosylase -
  SSU05_0062 cinA 66411..67628 (+) 1218 ABP89034.1 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA Machinery gene
  SSU05_0063 recA 67749..67841 (+) 93 ABP89035.1 recombination protein A Machinery gene
  SSU05_0064 recA 67866..68831 (+) 966 ABP89036.1 RecA/RadA recombinase Machinery gene
  SSU05_0065 - 69067..69465 (+) 399 ABP89037.1 Arsenate reductase and related protein, glutaredoxin family -
  SSU05_0066 - 69565..69831 (+) 267 ABP89038.1 Uncharacterized protein conserved in bacteria -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21739.10 Da        Isoelectric Point: 5.0800

>NTDB_id=20112 SSU05_0060 ABP89032.1 64526..65116(+) (ruvA) [Streptococcus suis 05ZYH33]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=20112 SSU05_0060 ABP89032.1 64526..65116(+) (ruvA) [Streptococcus suis 05ZYH33]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATACATTGTGGTAGAAACGCAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATCGAGCAGAAAAACATTAC
CTACCTGACCAAATTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTTGAAGAAGCCATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

76.142

100

0.765
  ruvA Streptococcus pneumoniae D39

76.142

100

0.765
  ruvA Streptococcus pneumoniae TIGR4

76.142

100

0.765
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408

Multiple sequence alignment