Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SSU05_2036 Genome accession   CP000407
Coordinates   1937548..1938186 (-) Length   212 a.a.
NCBI ID   ABP91002.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1932548..1943186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_2030 - 1932884..1933372 (-) 489 ABP90996.1 Response regulator of the LytR/AlgR family -
  SSU05_2031 - 1933508..1934266 (-) 759 ABP90997.1 hypothetical protein -
  SSU05_2032 - 1934474..1934968 (-) 495 ABP90998.1 conserved hypothetical protein -
  SSU05_2033 radA 1935092..1936459 (-) 1368 ABP90999.1 Predicted ATP-dependent serine protease Machinery gene
  SSU05_2034 - 1936621..1936992 (-) 372 ABP91000.1 Fructose-2,6-bisphosphatase -
  SSU05_2035 - 1936999..1937442 (-) 444 ABP91001.1 dUTPase -
  SSU05_2036 rcrQ 1937548..1938186 (-) 639 ABP91002.1 ABC-type multidrug transport system, ATPase and permease component Regulator
  SSU05_2037 - 1938138..1939331 (-) 1194 ABP91003.1 ABC-type multidrug transport system, ATPase and permease component -
  SSU05_2038 - 1939332..1941038 (-) 1707 ABP91004.1 putative ABC transporter (ATP-binding protein) -
  SSU05_2039 - 1941031..1941480 (-) 450 ABP91005.1 Transcriptional regulator -
  SSU05_2040 - 1941702..1942718 (+) 1017 ABP91006.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23472.59 Da        Isoelectric Point: 4.5270

>NTDB_id=20114 SSU05_2036 ABP91002.1 1937548..1938186(-) (rcrQ) [Streptococcus suis 05ZYH33]
MVAVVGPTGSGKTTIMNLINRFYDVNGGSVAFDGRDIREYDLDSLRNKVGIVLQESVLFSGTIADNIRFGDESISQEMVE
TAARATHIHDFIMSLPEGYETFVTDDENVFSTGQKQLISIARTLLTDPQVLILDEATSNVDTVTEAKIQKAMEAIIAGRT
SFVIAHRLKTILNADEIIVLKDGKVIEQGNHSQLLKLNGFYAELYHNQFVFE

Nucleotide


Download         Length: 639 bp        

>NTDB_id=20114 SSU05_2036 ABP91002.1 1937548..1938186(-) (rcrQ) [Streptococcus suis 05ZYH33]
ATGGTGGCGGTCGTTGGTCCGACGGGATCTGGTAAGACTACCATTATGAACTTGATTAACCGCTTCTACGATGTCAATGG
TGGTAGTGTGGCCTTTGATGGTCGCGATATTCGGGAATATGATTTGGATAGCTTGCGGAATAAGGTCGGTATCGTCTTGC
AGGAGTCGGTGTTATTCTCGGGTACTATTGCGGACAATATTCGCTTTGGTGATGAGAGCATTTCGCAGGAAATGGTGGAA
ACCGCAGCTCGTGCCACCCATATCCACGACTTCATCATGAGCTTGCCAGAGGGCTATGAAACCTTTGTGACCGATGATGA
GAATGTCTTCTCAACAGGTCAGAAACAGTTGATTTCCATTGCCCGTACGCTTTTGACAGACCCACAAGTCTTGATTTTGG
ACGAAGCAACCTCAAACGTTGATACCGTAACGGAGGCCAAAATTCAAAAGGCTATGGAGGCCATTATCGCAGGACGGACT
AGCTTCGTCATTGCCCACCGCCTCAAAACCATTCTCAATGCGGATGAAATCATCGTCCTCAAGGATGGAAAGGTTATCGA
GCAAGGCAACCACAGCCAACTTCTCAAACTAAATGGCTTCTACGCCGAACTTTACCACAACCAGTTTGTGTTTGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(2-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.081

99.528

0.528
  comA/nlmT Streptococcus mutans UA159

42.233

97.17

0.41
  comA Streptococcus mitis NCTC 12261

40.686

96.226

0.392
  rcrP Streptococcus mutans UA159

38.863

99.528

0.387
  comA Streptococcus pneumoniae R6

39.706

96.226

0.382
  comA Streptococcus pneumoniae Rx1

39.706

96.226

0.382
  comA Streptococcus pneumoniae D39

39.706

96.226

0.382
  comA Streptococcus pneumoniae TIGR4

39.216

96.226

0.377
  comA Streptococcus mitis SK321

39.216

96.226

0.377

Multiple sequence alignment