Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   SSU05_0059 Genome accession   CP000407
Coordinates   62547..64487 (+) Length   646 a.a.
NCBI ID   ABP89031.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57547..69487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0055 - 58420..59358 (-) 939 ABP89027.1 Transposase and inactivated derivative -
  SSU05_0056 - 59492..60718 (+) 1227 ABP89028.1 Folylpolyglutamate synthase -
  SSU05_0057 - 60743..60856 (+) 114 ABP89029.1 hypothetical protein -
  SSU05_0058 - 60909..62432 (+) 1524 ABP89030.1 Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
  SSU05_0059 hexB 62547..64487 (+) 1941 ABP89031.1 DNA mismatch repair enzyme (predicted ATPase) Machinery gene
  SSU05_0060 ruvA 64526..65116 (+) 591 ABP89032.1 Holliday junction resolvasome, DNA-binding subunit Machinery gene
  SSU05_0061 - 65757..66410 (+) 654 ABP89033.1 3-methyladenine DNA glycosylase -
  SSU05_0062 cinA 66411..67628 (+) 1218 ABP89034.1 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA Machinery gene
  SSU05_0063 recA 67749..67841 (+) 93 ABP89035.1 recombination protein A Machinery gene
  SSU05_0064 recA 67866..68831 (+) 966 ABP89036.1 RecA/RadA recombinase Machinery gene
  SSU05_0065 - 69067..69465 (+) 399 ABP89037.1 Arsenate reductase and related protein, glutaredoxin family -

Sequence

Protein


Download         Length: 646 a.a.        Molecular weight: 73126.36 Da        Isoelectric Point: 5.1152

>NTDB_id=20111 SSU05_0059 ABP89031.1 62547..64487(+) (hexB) [Streptococcus suis 05ZYH33]
MMSHIIELPEILANQIAAGEVIERPASVVKELVENSIDAGASQIEISVEEAGLKMIQITDNGEGIAPDEVALALRRHATS
KIKNQSDLFRIRTLGFRGEALPSIASVSHMIIETATADSAHGLHLEAKGGVIEKEEPVSRPVGTQITVSDLFYNTPARLK
YVRSQQAELSHIVDVVNRLSLAHPEIAFVLVNEGRELIRTAGTGKLRQAISGIYGIASAKKMVEIEAEDLDFQISGYVSL
PELTRANRNYISIFINGRYIKNFLLNRAILEGYGSKLMVGRFPLAVISIEIDPYLADVNVHPTKQEVRISKEKELMTLIR
EAISQALKEQDLIPDALENLAQSSTRPKVKAEQGTLPLREPKIYYDTIKQDFFLKPDVVAEDVKPLEEDRQEIVESPVEN
RPTSVQFAERQSVESEDQEHPNLSAKELAKLADKLDREETSTFPELEYFGQMHGTYLFAQGKTGLYIIDQHAAQERVKYE
YYREKIGQVDNSAQQLLVPYIFEFPQNDALDLVHKMDALRQVGVNLEEYGSNQFILREHPIWMKEEEIESGIYEMCDMLL
LTDQVSIKQYRAELAIMMSCKRSIKANHALDDYSARDLLRQLSYCQNPYNCPHGRPVLVHFSKSDMEKMFRRIQENHTSL
RELGKY

Nucleotide


Download         Length: 1941 bp        

>NTDB_id=20111 SSU05_0059 ABP89031.1 62547..64487(+) (hexB) [Streptococcus suis 05ZYH33]
ATGATGTCACATATTATTGAACTACCAGAAATACTAGCCAACCAGATTGCGGCTGGTGAGGTCATTGAGCGACCAGCCAG
TGTGGTTAAGGAGTTGGTGGAAAATTCCATTGACGCAGGGGCTAGTCAGATTGAAATTAGTGTTGAAGAGGCTGGCCTCA
AAATGATTCAAATTACGGATAACGGTGAGGGGATTGCCCCTGATGAAGTAGCGCTTGCCCTCCGCCGTCACGCCACCAGT
AAGATAAAAAATCAATCGGATTTGTTTCGTATTCGCACCCTCGGTTTTCGTGGAGAAGCCCTGCCCTCCATTGCTTCTGT
CAGTCATATGATCATTGAGACAGCTACGGCAGACTCTGCACACGGACTTCATTTGGAGGCCAAAGGTGGTGTCATCGAGA
AAGAGGAGCCAGTTAGTCGTCCAGTTGGTACGCAGATTACTGTTTCGGATTTATTTTACAATACCCCTGCTCGTCTCAAA
TATGTTCGCAGTCAACAGGCTGAATTATCACATATTGTTGATGTTGTAAATCGATTGAGTCTAGCTCATCCGGAAATAGC
CTTTGTCTTAGTAAACGAAGGACGAGAATTAATTAGAACTGCAGGGACAGGGAAACTTCGTCAGGCAATTTCAGGGATTT
ATGGGATTGCTTCTGCCAAAAAAATGGTTGAAATTGAGGCAGAAGATCTGGATTTTCAGATTTCAGGTTATGTTTCCTTG
CCAGAGTTGACTCGTGCCAACCGCAACTACATTTCCATTTTTATCAACGGTCGCTATATCAAGAATTTTTTGCTTAATCG
AGCGATTTTGGAAGGTTACGGCAGTAAGTTGATGGTTGGACGCTTTCCGCTGGCAGTCATTTCTATAGAAATTGACCCCT
ATCTTGCTGATGTCAATGTGCATCCGACCAAGCAGGAAGTTCGCATCTCCAAGGAAAAAGAACTCATGACCTTGATTCGA
GAGGCGATTAGTCAAGCACTTAAAGAGCAGGACTTGATACCAGATGCTCTTGAGAATTTAGCTCAGTCAAGTACTCGACC
AAAAGTAAAAGCAGAGCAAGGCACCTTACCACTCAGAGAGCCAAAAATCTATTATGATACGATTAAGCAAGACTTCTTCT
TAAAACCAGACGTGGTCGCTGAGGATGTCAAACCTCTCGAAGAGGATAGGCAAGAGATTGTTGAGTCGCCTGTCGAAAAT
AGACCTACATCTGTTCAATTTGCAGAACGTCAGTCGGTGGAATCAGAAGATCAGGAGCATCCTAATCTAAGTGCAAAAGA
ATTGGCAAAACTGGCAGATAAATTAGACCGGGAGGAAACATCGACATTTCCAGAGTTAGAATATTTTGGTCAAATGCATG
GGACGTATTTATTTGCACAAGGCAAGACAGGACTTTATATCATTGACCAGCATGCCGCACAAGAGAGGGTCAAATACGAA
TACTACCGTGAGAAAATTGGACAAGTTGACAATTCAGCTCAACAGTTATTGGTGCCGTATATTTTTGAATTTCCGCAGAA
TGATGCCCTTGACCTCGTCCACAAAATGGATGCCCTTCGTCAAGTTGGTGTCAACTTGGAAGAATATGGATCTAATCAAT
TTATTCTGCGTGAACATCCTATTTGGATGAAGGAAGAGGAGATTGAGTCTGGCATTTATGAGATGTGCGACATGTTGCTC
TTGACGGATCAGGTGTCAATCAAGCAGTATCGGGCAGAACTGGCCATCATGATGTCTTGTAAACGGTCAATCAAGGCCAA
TCATGCTTTGGATGATTATTCGGCGCGTGATTTATTGAGACAATTGTCTTACTGCCAAAATCCCTATAATTGCCCGCACG
GCCGCCCAGTCTTAGTGCATTTTAGCAAATCGGATATGGAAAAAATGTTCCGTCGCATTCAAGAAAATCACACGAGTTTG
CGTGAATTAGGGAAGTATTAA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(26-125)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(211-327)

MutL C terminal dimerisation domain (MutL_C)

(448-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

72.462

100

0.729

Multiple sequence alignment