Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SDD27957_10385 Genome accession   CM001076
Coordinates   1967010..1968719 (-) Length   569 a.a.
NCBI ID   EFY03660.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1962010..1973719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_10365 radA 1962342..1963604 (-) 1263 EFY03656.1 DNA repair protein RadA Machinery gene
  SDD27957_10370 dut 1963786..1964232 (-) 447 EFY03657.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  SDD27957_10375 - 1964341..1965108 (-) 768 EFY03658.1 hypothetical cytosolic protein -
  SDD27957_10380 - 1965226..1967010 (-) 1785 EFY03659.1 multidrug/protein/lipid ABC transporter family ATP-binding and permease -
  SDD27957_10385 rcrP 1967010..1968719 (-) 1710 EFY03660.1 ABC transporter ATP-binding membrane protein Regulator
  SDD27957_10390 rcrR 1968712..1969161 (-) 450 EFY03661.1 hypothetical protein Regulator
  SDD27957_10395 gpsA 1969364..1970380 (+) 1017 EFY03662.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SDD27957_10400 - 1970412..1971314 (+) 903 EFY03663.1 UDP-glucose pyrophosphorylase -
  SDD27957_10405 - 1971478..1972152 (-) 675 EFY03664.1 hypothetical protein -
  SDD27957_10410 - 1972149..1972748 (-) 600 EFY03665.1 5-formyltetrahydrofolate cyclo-ligase family protein -
  SDD27957_10415 - 1972814..1972954 (-) 141 EFY03666.1 hypothetical protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 63271.00 Da        Isoelectric Point: 6.5339

>NTDB_id=20099 SDD27957_10385 EFY03660.1 1967010..1968719(-) (rcrP) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MLKEAILRYKWYALGSLIMIIGVVASSLLQPHYLKDVLSAVIQNNQGKIYNVGILLLIIALMGLISGAVNTILAAKIAQG
VSADIREKTFRKIQSFSYANVEAFNAGNLVVRMTNDINQIQNLVMMLFQVLFRLPILFIGAFIMAVQTLPDLWWVIVLMV
ILIGLIMVLVMSQMGPRFGKFQKLMDKINRIAKENLRGVRVVKSFVQEREQYAKFKETSNELLDLNLFIGYGFSLMQPAL
MLVSYLAVYVSIYMVSGMVETDPTVIGNIASFMTYMMQIMFSIIMVGFMGMQASRAFVSIGRLKEILNTEPAMTFDTEQE
EEVSGSIVFEDVSFTYPNDDEPTLRHISFKIEPGQMVGVVGATGAGKSTLAQLIPRLFDPQEGQILLGGKPIKSLSQATL
RQTVSIVLQKAILFSGTIADNLRQGSATADDHAMERAARIAQAKEFIDRMDDRYESQVEERGNNFSGGQKQRMSIARGVI
NQPKILVLDDSTSALDAKSERLVQEALNKELKETTTVIIAQKISSVVKADKILVLDQGQLIGEGTHAELVANNAIYREIY
ETQKGKEED

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=20099 SDD27957_10385 EFY03660.1 1967010..1968719(-) (rcrP) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGCTTAAAGAAGCGATTTTGCGTTACAAATGGTACGCATTGGGCTCGCTCATCATGATTATTGGGGTGGTAGCGAGCAG
TTTGCTGCAGCCTCATTATTTAAAAGATGTGCTGAGTGCTGTTATTCAAAATAACCAAGGTAAGATTTACAATGTGGGGA
TATTGTTGCTTATTATTGCGCTGATGGGATTGATTTCCGGGGCAGTTAATACTATTTTAGCTGCTAAGATTGCTCAAGGG
GTCTCAGCGGATATTCGAGAAAAGACTTTTCGAAAAATTCAGAGTTTTTCTTATGCTAATGTGGAGGCATTTAATGCTGG
GAACCTCGTGGTTCGGATGACCAATGATATTAACCAAATCCAAAATTTGGTAATGATGCTGTTTCAAGTGCTTTTCCGTC
TGCCGATTCTCTTTATTGGAGCTTTTATTATGGCGGTGCAGACCCTACCTGACTTATGGTGGGTGATTGTGCTGATGGTT
ATTTTGATTGGTCTTATCATGGTTTTGGTCATGAGTCAGATGGGCCCACGTTTTGGGAAATTCCAAAAGTTGATGGACAA
GATTAATCGAATTGCTAAGGAAAACCTTCGTGGCGTGCGTGTGGTTAAATCCTTTGTGCAAGAACGGGAACAATATGCCA
AATTTAAAGAAACGTCCAATGAACTATTAGATTTGAATCTCTTTATCGGTTATGGTTTTTCGTTGATGCAACCTGCTTTG
ATGTTGGTATCTTATTTGGCAGTGTATGTGTCCATCTATATGGTTTCAGGCATGGTTGAAACAGATCCTACTGTTATTGG
GAATATTGCTTCTTTTATGACTTATATGATGCAAATCATGTTTTCAATTATCATGGTCGGCTTTATGGGCATGCAAGCTA
GTCGCGCCTTTGTCTCTATTGGTCGTCTCAAAGAGATTCTCAATACTGAGCCAGCCATGACCTTTGACACTGAGCAAGAA
GAAGAGGTTTCAGGTAGCATTGTCTTTGAGGATGTCAGCTTTACTTATCCTAATGATGATGAGCCGACCTTACGTCATAT
TTCCTTTAAGATTGAACCTGGTCAAATGGTTGGTGTTGTCGGTGCTACTGGTGCTGGGAAGTCTACACTGGCACAGCTTA
TTCCGCGCTTGTTTGACCCGCAAGAAGGTCAAATCTTACTGGGAGGCAAACCGATTAAATCCTTGAGTCAAGCGACTCTT
CGTCAAACGGTTTCTATCGTGTTGCAAAAGGCTATTCTCTTTTCGGGAACCATTGCAGATAATCTTCGTCAAGGATCAGC
AACTGCAGATGATCATGCCATGGAACGAGCTGCACGTATTGCTCAAGCCAAGGAATTTATAGATCGTATGGATGACCGCT
ATGAAAGCCAAGTGGAAGAACGAGGCAATAACTTCTCCGGTGGTCAAAAACAACGGATGTCAATTGCGCGTGGCGTCATT
AACCAACCTAAGATTCTTGTTTTGGATGACTCAACATCGGCTCTGGATGCCAAGTCAGAAAGATTAGTTCAAGAAGCCTT
GAATAAAGAGTTGAAAGAGACCACCACAGTGATCATTGCCCAAAAGATTTCGTCAGTGGTAAAGGCTGATAAGATTTTAG
TTCTCGATCAGGGCCAACTGATTGGCGAAGGAACTCATGCTGAGTTGGTTGCTAATAATGCGATTTATCGTGAAATTTAT
GAGACCCAAAAAGGGAAGGAGGAAGACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(344-493)

ABC transporter transmembrane region (ABC_membrane)

(16-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

35.103

100

0.36

Multiple sequence alignment