Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   SSU05_1360 Genome accession   CP000407
Coordinates   1302459..1302923 (-) Length   154 a.a.
NCBI ID   ABP90326.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1297459..1307923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1355 - 1298093..1298842 (-) 750 ABP90321.1 ATPase component of ABC transporters with duplicated ATPase domains -
  SSU05_1356 - 1299005..1299547 (-) 543 ABP90322.1 ABC transporter, ATP-binding protein -
  SSU05_1357 vicX 1300066..1300869 (-) 804 ABP90323.1 Metal-dependent hydrolases of the beta-lactamase superfamily I Regulator
  SSU05_1358 micB 1300876..1302225 (-) 1350 ABP90324.1 Signal transduction histidine kinase Regulator
  SSU05_1359 vicR 1302218..1302487 (-) 270 ABP90325.1 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Regulator
  SSU05_1360 micA 1302459..1302923 (-) 465 ABP90326.1 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Regulator
  SSU05_1361 - 1303117..1303878 (+) 762 ABP90327.1 ABC-type polar amino acid transport system, ATPase component -
  SSU05_1362 - 1303889..1304728 (+) 840 ABP90328.1 ABC transporter substrate-binding protein - glutamine transport/Major cell binding factor precursor -
  SSU05_1363 - 1304743..1305225 (+) 483 ABP90329.1 amino acid ABC transporter, permease protein -
  SSU05_1364 - 1305117..1305440 (+) 324 ABP90330.1 amino acid (glutamine) ABC transporter permease protein -
  SSU05_1365 - 1305455..1306114 (+) 660 ABP90331.1 ABC-type amino acid transport system, permease component -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17293.96 Da        Isoelectric Point: 4.2390

>NTDB_id=20099 SSU05_1360 ABP90326.1 1302459..1302923(-) (micA) [Streptococcus suis 05ZYH33]
MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLEVARTIRKTSNVPILMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSELPETQTNIESTGTPELVIGDLVILPDAFVAKQAW

Nucleotide


Download         Length: 465 bp        

>NTDB_id=20099 SSU05_1360 ABP90326.1 1302459..1302923(-) (micA) [Streptococcus suis 05ZYH33]
ATGAAAAAAATATTAATTGTAGATGATGAAAAACCAATCTCAGATATTATTAAGTTTAATATGACGCGTGAGGGATATGA
AGTTGTGACAGCTTTCGATGGACGTGAAGCCTTGGAAGTATTTGAGGCTGAGTTTCCTGACATTGTCATTTTGGACTTGA
TGTTGCCAGAATTGGACGGACTAGAGGTTGCTCGAACGATTCGTAAGACCAGCAATGTTCCAATCTTGATGTTATCTGCT
AAAGATAGCGAATTTGATAAGGTTATCGGGCTTGAAATAGGGGCGGATGATTATGTGACCAAGCCCTTCTCTAATCGCGA
ATTACAGGCGCGTGTTAAGGCTCTTCTTCGTCGTAGTGAATTGCCAGAGACGCAGACAAATATTGAGTCAACAGGAACTC
CAGAGTTGGTGATTGGCGATTTGGTCATTCTGCCTGATGCGTTTGTTGCTAAGCAAGCATGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

81.046

99.351

0.805
  vicR Streptococcus mutans UA159

75.817

99.351

0.753
  covR Lactococcus lactis subsp. lactis strain DGCC12653

48.175

88.961

0.429
  covR Streptococcus salivarius strain HSISS4

48.76

78.571

0.383

Multiple sequence alignment