Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SSU05_1357 Genome accession   CP000407
Coordinates   1300066..1300869 (-) Length   267 a.a.
NCBI ID   ABP90323.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1295066..1305869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1353 - 1295336..1295932 (-) 597 ABP90319.1 Recombinational DNA repair protein (RecF pathway) -
  SSU05_1354 - 1295941..1298016 (-) 2076 ABP90320.1 Cell division protein FtsI/penicillin-binding protein 2 -
  SSU05_1355 - 1298093..1298842 (-) 750 ABP90321.1 ATPase component of ABC transporters with duplicated ATPase domains -
  SSU05_1356 - 1299005..1299547 (-) 543 ABP90322.1 ABC transporter, ATP-binding protein -
  SSU05_1357 vicX 1300066..1300869 (-) 804 ABP90323.1 Metal-dependent hydrolases of the beta-lactamase superfamily I Regulator
  SSU05_1358 micB 1300876..1302225 (-) 1350 ABP90324.1 Signal transduction histidine kinase Regulator
  SSU05_1359 vicR 1302218..1302487 (-) 270 ABP90325.1 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Regulator
  SSU05_1360 micA 1302459..1302923 (-) 465 ABP90326.1 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Regulator
  SSU05_1361 - 1303117..1303878 (+) 762 ABP90327.1 ABC-type polar amino acid transport system, ATPase component -
  SSU05_1362 - 1303889..1304728 (+) 840 ABP90328.1 ABC transporter substrate-binding protein - glutamine transport/Major cell binding factor precursor -
  SSU05_1363 - 1304743..1305225 (+) 483 ABP90329.1 amino acid ABC transporter, permease protein -
  SSU05_1364 - 1305117..1305440 (+) 324 ABP90330.1 amino acid (glutamine) ABC transporter permease protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29643.75 Da        Isoelectric Point: 5.7755

>NTDB_id=20096 SSU05_1357 ABP90323.1 1300066..1300869(-) (vicX) [Streptococcus suis 05ZYH33]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=20096 SSU05_1357 ABP90323.1 1300066..1300869(-) (vicX) [Streptococcus suis 05ZYH33]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCTGCATGCCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCGCAGGTTCATATTCATGGAATTTGAA
GCAACGGATTTTGTCAGATAAGGGCCATCTTTGTAATGAAGATGGAGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768

Multiple sequence alignment