Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SDD27957_01715 Genome accession   CM001076
Coordinates   345329..347299 (+) Length   656 a.a.
NCBI ID   EFY02027.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 340329..352299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_01695 - 341342..342523 (-) 1182 EFY02023.1 D-alanyl-D-alanine serine-type carboxypeptidase -
  SDD27957_01700 - 342710..342853 (+) 144 EFY02024.1 hypothetical protein -
  SDD27957_01705 - 343262..343567 (+) 306 EFY02025.1 integrase catalytic subunit -
  SDD27957_01710 - 343761..344999 (-) 1239 EFY02026.1 D-alanyl-D-alanine serine-type carboxypeptidase -
  SDD27957_01715 amiA 345329..347299 (+) 1971 EFY02027.1 oligopeptide-binding protein oppA Regulator
  SDD27957_01720 amiC 347365..348867 (+) 1503 EFY02028.1 Oligopeptide transport system permease protein oppB Regulator
  SDD27957_01725 amiD 348867..349793 (+) 927 EFY02029.1 Oligopeptide transport system permease protein oppC Regulator
  SDD27957_01730 amiE 349802..350872 (+) 1071 EFY02030.1 putative oligopeptide transporter ATP-binding protein Regulator
  SDD27957_01735 amiF 350865..351788 (+) 924 EFY02031.1 Oligopeptide transport ATP-binding protein oppF Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72064.25 Da        Isoelectric Point: 4.9470

>NTDB_id=20020 SDD27957_01715 EFY02027.1 345329..347299(+) (amiA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MKKSRWLATLGVAVLSVSVLAACGGKNASGGSDATKAYKYVFVNDPKSLDYILTNGGGTTDVATQMVDGLLENDEYGSLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDAKSEALYVVEDSIKNLKAYQNGEVDFKEV
GIKALDEKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSKGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGLESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMQDGYIRHLSWNLNRTSFNNTKK
DAAQQEDGKKALNNKDFRQANQFGFDRGSFQAQTVGEDAKTKALRNMLVPPTFVTIGKNDFGSEVEKEIAKLGDEWKNIN
LADAQDGLYNPEKAKVEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVVVNVLETETSTHE
SQGFYAKTPEQQDYDIIASWWGPDYQDPRTYLDIMSPVDGGSVIQKLGVKAGESNDIVAAAGLDTYQTLLDEAAAITDDN
DARYTAYAKAQAYLLDDAVDIPVVSTGGSPRVSKVVPFSGAFAWAGAKGSLSYKGMRLQDKPVTTKQYEKAKEKWLKAKA
KSNADYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=20020 SDD27957_01715 EFY02027.1 345329..347299(+) (amiA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGAAGAAAAGTAGATGGTTAGCAACTTTAGGTGTTGCTGTATTATCAGTATCCGTTTTAGCAGCTTGTGGTGGCAAAAA
TGCCTCAGGCGGTTCAGATGCAACTAAAGCTTACAAATATGTGTTTGTTAATGATCCAAAATCGTTGGATTACATTTTAA
CAAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTAGATGGTCTTTTGGAAAATGACGAGTATGGTAGCTTGGTA
CCATCGCTTGCTAAAGATTGGAAAGTTTCAAAAGATGGCCTAACCTATACTTATACTCTTCGTGATGGTGTTTCTTGGTA
CACGGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGACTTTGTAACTGGTCTAAAACATGCGGTTGATGCTAAAT
CTGAAGCTTTATATGTTGTTGAAGATTCCATCAAAAATTTGAAAGCTTACCAAAATGGTGAGGTTGATTTCAAAGAAGTC
GGTATTAAAGCGCTTGATGAAAAAACGGTTCAATACACTTTAAACAAACCTGAAAGTTACTGGAATTCGAAAACAACATA
TAGTGTACTTTTCCCAGTTAATGCGAAATTCTTGAAGTCAAAAGGTAAAGATTTTGGAACAACTGACCCATCATCAATCC
TTGTTAACGGAGCTTATTTCTTAAGTGCCTTCACTTCAAAATCATCCATGGAATTTCATAAAAATGAAAATTACTGGGAT
GCTAAGAATGTTGGACTAGAATCTGTTAAATTGACTTACTCAGACGGTTCAGACCCAGGTTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGTGTTGCACGACTTTACCCAAATGATCCAACTTATAAATCAGCTAAGAAAAATTACGCTGATAACA
TTACTTACGGTATGCAAGACGGTTATATTCGTCACTTATCTTGGAATTTAAATCGTACATCATTTAACAATACTAAAAAA
GATGCAGCTCAACAGGAGGATGGCAAAAAAGCCCTTAATAACAAAGACTTCCGTCAAGCTAACCAATTTGGATTTGATCG
TGGTTCGTTCCAAGCTCAGACAGTCGGTGAAGATGCTAAAACAAAAGCTCTACGTAATATGCTAGTTCCACCAACATTTG
TGACTATTGGAAAAAATGACTTTGGTTCAGAAGTTGAAAAGGAAATTGCAAAACTTGGCGATGAATGGAAAAACATCAAC
TTAGCTGACGCTCAAGATGGTCTCTACAATCCAGAAAAGGCTAAAGTTGAGTTTGCTAAAGCCAAAGAAGCTCTGACAGC
TGAAGGAGTAACCTTCCCGGTTCAATTAGATTATCCTGTTGACCAAGCAAACGCAGCAACTGTTCAAGAGGCACAATCCT
TTAAACAATCTGTCGAAGCATCACTTGGGAAAGAAAACGTTGTTGTTAACGTTCTTGAAACAGAGACCTCTACTCATGAG
TCTCAAGGTTTCTACGCGAAAACACCAGAGCAGCAAGACTATGATATTATTGCATCGTGGTGGGGACCAGACTACCAAGA
TCCACGTACCTACCTTGATATTATGAGTCCAGTAGATGGTGGATCTGTTATCCAAAAACTGGGAGTTAAAGCAGGTGAAA
GCAATGATATTGTAGCAGCTGCAGGTCTTGATACCTACCAAACTCTTCTTGATGAAGCAGCAGCAATTACAGACGATAAT
GATGCTCGTTACACAGCTTACGCGAAAGCTCAAGCTTACTTGTTAGATGATGCTGTTGATATTCCTGTTGTATCTACAGG
TGGTTCACCACGTGTATCTAAAGTTGTACCTTTTAGTGGTGCCTTTGCATGGGCGGGGGCTAAAGGTTCGCTCTCATATA
AAGGAATGAGACTTCAAGACAAACCTGTTACGACAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAAGCAAAGGCT
AAATCAAACGCAGACTATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.076

100

0.505
  amiA3 Streptococcus thermophilus LMG 18311

49.547

100

0.5
  amiA3 Streptococcus thermophilus LMD-9

48.943

100

0.494

Multiple sequence alignment