Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SDD27957_01720 Genome accession   CM001076
Coordinates   347365..348867 (+) Length   500 a.a.
NCBI ID   EFY02028.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 342365..353867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_01700 - 342710..342853 (+) 144 EFY02024.1 hypothetical protein -
  SDD27957_01705 - 343262..343567 (+) 306 EFY02025.1 integrase catalytic subunit -
  SDD27957_01710 - 343761..344999 (-) 1239 EFY02026.1 D-alanyl-D-alanine serine-type carboxypeptidase -
  SDD27957_01715 amiA 345329..347299 (+) 1971 EFY02027.1 oligopeptide-binding protein oppA Regulator
  SDD27957_01720 amiC 347365..348867 (+) 1503 EFY02028.1 Oligopeptide transport system permease protein oppB Regulator
  SDD27957_01725 amiD 348867..349793 (+) 927 EFY02029.1 Oligopeptide transport system permease protein oppC Regulator
  SDD27957_01730 amiE 349802..350872 (+) 1071 EFY02030.1 putative oligopeptide transporter ATP-binding protein Regulator
  SDD27957_01735 amiF 350865..351788 (+) 924 EFY02031.1 Oligopeptide transport ATP-binding protein oppF Regulator

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 55970.36 Da        Isoelectric Point: 10.1806

>NTDB_id=20021 SDD27957_01720 EFY02028.1 347365..348867(+) (amiC) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKAAYESLTFQRMGYINYFSSKELKDHAS
KVDSSVTTEATSANKVIYEKYIDTLGNGWQLKRFPVSKKFYATRQIPIYERVWNFFSNLVVIDHPWKIQDKDNPNLARYV
RLENDKSIGWSLVGSGTQHKYLVYVNGKFPFLHQNLVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDITFPTGVTKKSS
VDIYSRTYKNPKSMDDITKANYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVLIAYVIGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAIIYVVRFLGSMVGLPDSFPMLGASSPKSYVLPALILGILSIPSTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYKDHLFKNAMVPIVSGIPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIAMTIVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=20021 SDD27957_01720 EFY02028.1 347365..348867(+) (amiC) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGAAAAAATACATCTTAAACCGTATCTTACGATCATTAGTATCGGTTGTTCTGGTAACGGCTTTAACATACACCATCGT
ATATACCCTCGTCCCTGTCGGTCTTATCTTTAAGCAAGACCCTAACTACAATAAGATGACGACGACGCCAGATAAAAAGG
CTGCTTACGAAAGTTTAACCTTCCAACGTATGGGTTATATTAATTACTTTTCAAGTAAAGAGTTAAAAGATCATGCTTCT
AAAGTAGATAGTAGTGTAACGACTGAAGCGACTAGTGCTAACAAAGTTATTTATGAGAAATATATTGATACCCTCGGTAA
TGGCTGGCAGCTAAAACGTTTCCCGGTTAGCAAAAAATTCTATGCTACTCGTCAGATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAACTTAGTTGTTATCGACCATCCTTGGAAGATTCAAGACAAGGATAACCCTAACCTAGCTAGATATGTT
CGCCTTGAAAATGATAAATCTATTGGCTGGTCCCTTGTTGGGTCAGGAACACAACACAAATACCTTGTCTATGTCAATGG
TAAGTTCCCTTTCCTTCATCAAAACCTTGTCACACTAAACTTAGGAACATCTTATCCAACTTATAGTAACATTCCTGTTC
TGCAGGTTATTTCCCAAGGTCAAGGACGAACAGCACTTCAAGATATCACTTTCCCAACAGGTGTGACTAAAAAATCATCG
GTAGATATTTATAGTCGTACTTATAAAAACCCAAAATCAATGGATGATATTACCAAAGCAAACTATGGTAAAGGTGATTC
TTATACTAAGACCATTAATAACTATGTTGACCCATCAATGATTCACAATTCCTTTGTTATTGGGTTCTTTGGTGTCCTAA
TTGCTTATGTTATTGGACTACCTCTCGGTCTATTTATGGCACGCTTCAAAAATACTTACTTTGATCGCTTTTCAACAGCA
ACCATGACCTTCATGCTTGCCTTACCAAGTATTGCTATTATCTATGTGGTCCGTTTCTTAGGAAGTATGGTTGGTTTGCC
AGATAGTTTCCCTATGCTAGGAGCGTCTAGCCCTAAATCTTACGTATTACCAGCTCTTATTTTGGGAATTTTAAGTATCC
CAAGTACAGTTATCTGGTTCCGTCGTTACCTTGTTGACCTTCAGGCTAGTGATTGGGTACGGTTTGCTCGGTCAAAAGGG
TTATCAGAATCTGAAATTTATAAAGACCACCTTTTCAAAAATGCTATGGTTCCTATTGTATCAGGTATTCCGGCAAGTAT
TATTCTTGCGATTGGTGGAGCAACATTAACAGAGACGGTTTTTGCCTTCCCAGGTATGGGGAAAATGTTGATTGATTCTA
TCAAATCAGCTAACAACTCTATGATTGTTGGGCTAACCTTTATTTTCACTGTCTTGTCAATTGTATCTCTACTGTTAGGA
GATATTGCTATGACAATTGTCGATCCACGTATTAAATTGTCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60.2

100

0.602
  amiC Streptococcus thermophilus LMD-9

60

100

0.6
  amiC Streptococcus thermophilus LMG 18311

60

100

0.6

Multiple sequence alignment