Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CD799_RS08660 | Genome accession | NZ_CP022002 |
| Coordinates | 1825784..1826212 (+) | Length | 142 a.a. |
| NCBI ID | WP_088376622.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain Pa1242 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1820784..1831212
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CD799_RS08635 (CD799_08635) | yacG | 1820952..1821152 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| CD799_RS08640 (CD799_08640) | coaE | 1821149..1821760 (-) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| CD799_RS08645 (CD799_08645) | pilD | 1821757..1822629 (-) | 873 | WP_019726811.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| CD799_RS08650 (CD799_08650) | pilC | 1822632..1823849 (-) | 1218 | WP_010792214.1 | type II secretion system F family protein | Machinery gene |
| CD799_RS08655 (CD799_08655) | pilB | 1823853..1825553 (-) | 1701 | WP_003120945.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CD799_RS08660 (CD799_08660) | pilA | 1825784..1826212 (+) | 429 | WP_088376622.1 | pilin | Machinery gene |
| CD799_RS08665 (CD799_08665) | - | 1826425..1827450 (-) | 1026 | WP_019692570.1 | IS110-like element IS1383 family transposase | - |
| CD799_RS34345 | - | 1827507..1827680 (+) | 174 | WP_232477551.1 | pilin | - |
| CD799_RS08675 (CD799_08675) | nadC | 1827833..1828681 (-) | 849 | WP_003116246.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14331.49 Da Isoelectric Point: 8.4750
>NTDB_id=199116 CD799_RS08660 WP_088376622.1 1825784..1826212(+) (pilA) [Pseudomonas aeruginosa strain Pa1242]
MKAAQKGFTLIELMIVVAIIGILAAIAIPAYQDYTARAQLSEAMTLASGLKTKVSDIFSQDGSCPANTAATAGIEKDTDI
NGKYVAKVTTGGTAAASGGCTIVATMKASDVATPLRGKTLTLTLGNAYMDASRSSIGSHAGA
MKAAQKGFTLIELMIVVAIIGILAAIAIPAYQDYTARAQLSEAMTLASGLKTKVSDIFSQDGSCPANTAATAGIEKDTDI
NGKYVAKVTTGGTAAASGGCTIVATMKASDVATPLRGKTLTLTLGNAYMDASRSSIGSHAGA
Nucleotide
Download Length: 429 bp
>NTDB_id=199116 CD799_RS08660 WP_088376622.1 1825784..1826212(+) (pilA) [Pseudomonas aeruginosa strain Pa1242]
ATGAAAGCTGCTCAAAAAGGCTTTACCTTGATCGAATTGATGATCGTGGTCGCGATCATCGGTATTCTGGCTGCCATCGC
TATTCCAGCGTATCAGGACTACACCGCACGCGCTCAGCTTAGCGAAGCCATGACCCTGGCCAGTGGTCTCAAGACGAAAG
TGAGCGATATCTTCTCTCAGGATGGGTCCTGCCCGGCTAATACTGCTGCCACGGCAGGCATCGAGAAAGATACCGACATC
AACGGCAAGTATGTTGCCAAGGTAACAACTGGTGGCACCGCAGCTGCGTCTGGTGGTTGCACTATCGTTGCTACTATGAA
AGCCTCTGATGTGGCTACTCCTCTGAGGGGGAAAACTCTGACTTTGACTCTAGGAAATGCTTATATGGACGCCTCCCGGA
GCTCAATAGGTAGCCATGCTGGCGCGTAG
ATGAAAGCTGCTCAAAAAGGCTTTACCTTGATCGAATTGATGATCGTGGTCGCGATCATCGGTATTCTGGCTGCCATCGC
TATTCCAGCGTATCAGGACTACACCGCACGCGCTCAGCTTAGCGAAGCCATGACCCTGGCCAGTGGTCTCAAGACGAAAG
TGAGCGATATCTTCTCTCAGGATGGGTCCTGCCCGGCTAATACTGCTGCCACGGCAGGCATCGAGAAAGATACCGACATC
AACGGCAAGTATGTTGCCAAGGTAACAACTGGTGGCACCGCAGCTGCGTCTGGTGGTTGCACTATCGTTGCTACTATGAA
AGCCTCTGATGTGGCTACTCCTCTGAGGGGGAAAACTCTGACTTTGACTCTAGGAAATGCTTATATGGACGCCTCCCGGA
GCTCAATAGGTAGCCATGCTGGCGCGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
51.22 |
86.62 |
0.444 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
50.407 |
86.62 |
0.437 |
| pilA | Acinetobacter nosocomialis M2 |
55.357 |
78.873 |
0.437 |
| pilE | Neisseria gonorrhoeae MS11 |
49.18 |
85.915 |
0.423 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
48.361 |
85.915 |
0.415 |
| pilA/pilA1 | Eikenella corrodens VA1 |
44.961 |
90.845 |
0.408 |