Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LPB072_RS01200 Genome accession   NZ_CP017476
Coordinates   239596..241161 (+) Length   521 a.a.
NCBI ID   WP_066095060.1    Uniprot ID   A0A162SRP6
Organism   Hydrogenophaga crassostreae strain LPB0072     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 234596..246161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB072_RS01180 (LPB072_01180) glcE 235766..236890 (-) 1125 WP_096349125.1 glycolate oxidase subunit GlcE -
  LPB072_RS01185 (LPB072_01185) - 236979..237254 (-) 276 WP_066095052.1 hypothetical protein -
  LPB072_RS01190 (LPB072_01190) - 237387..238820 (-) 1434 WP_066095055.1 ammonium transporter -
  LPB072_RS01195 (LPB072_01195) - 238856..239194 (-) 339 WP_066095057.1 P-II family nitrogen regulator -
  LPB072_RS01200 (LPB072_01200) comM 239596..241161 (+) 1566 WP_066095060.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LPB072_RS01205 (LPB072_01205) - 241286..243148 (-) 1863 WP_066095065.1 right-handed parallel beta-helix repeat-containing protein -
  LPB072_RS01210 (LPB072_01210) metH 243361..246057 (-) 2697 WP_082877136.1 methionine synthase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 54817.48 Da        Isoelectric Point: 7.6286

>NTDB_id=198601 LPB072_RS01200 WP_066095060.1 239596..241161(+) (comM) [Hydrogenophaga crassostreae strain LPB0072]
MSLALVHSRALLGLEARPVQVEVHLANGLPSFTLVGLADTEVKEARERVRSAIANAGLDFPSNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIAAERLTGWEFAGELSLGGDLRPIRGALAMSLALHRAAEQAGEQTASLVLPPGSAEEAALVPEA
HVYRARHLLDVVAQFLPVSNKAGEEALPLPEGDGWARLTARQNEVAASYADLSDVKGQSAAKRALEIAAAGGHSLLMMGP
PGSGKSMLAQRFAGLLPPMSTGEALESAAVASLAGRFSLDRWGQRPTCAPHHSASAVALVGGGSPPRPGEISLAHQGVLF
LDELPEFPRAALEALREPLESGHIRISRAAMQSEFPARFQLVAAMNPCPCGYLGHPARACRCTPDQIFRYQGKLSGPLLD
RIDLHVEVPAIASDDLLHGAAGEGSAAVRDRVVAARWRAMARQGQNNQALAGKALDEHLHAEAAALTFLNTASTRLGWSA
RSTHRALRVARTIADLAGAGNVTAAHVAEAVQYRRALRQNG

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=198601 LPB072_RS01200 WP_066095060.1 239596..241161(+) (comM) [Hydrogenophaga crassostreae strain LPB0072]
ATGAGCTTAGCTTTGGTGCACAGCCGTGCGTTGTTGGGGCTGGAGGCGCGGCCGGTTCAGGTGGAGGTGCATCTGGCCAA
TGGCTTGCCCAGCTTCACTCTGGTTGGTCTGGCCGATACCGAGGTCAAAGAAGCACGCGAACGCGTGCGTTCGGCCATCG
CCAACGCGGGTCTGGACTTTCCCAGCAACAAGCGCATCACCGTGAATCTGGCGCCCGCCGATCTGCCGAAAGACTCGGGA
CGCTTCGATTTGCCCATTGCCCTGGGCATCCTTGCCGCCAGCGGCCAGATTGCAGCCGAACGTTTGACCGGTTGGGAGTT
CGCTGGCGAGTTGTCGCTCGGCGGCGACCTGCGGCCCATACGTGGTGCCCTGGCCATGAGTCTGGCGTTGCACCGCGCAG
CCGAGCAGGCGGGTGAGCAAACGGCCAGCCTGGTGTTGCCCCCCGGCAGCGCCGAAGAGGCGGCGCTGGTGCCCGAAGCG
CATGTGTACCGGGCGCGCCACCTGCTTGACGTGGTGGCCCAGTTTCTGCCTGTGTCGAACAAGGCGGGCGAAGAGGCCTT
GCCTTTGCCGGAGGGCGACGGGTGGGCGCGGCTCACGGCGCGCCAGAACGAAGTGGCGGCAAGCTATGCCGATCTGTCGG
ACGTCAAGGGCCAGTCGGCGGCGAAGCGCGCCCTGGAAATCGCGGCCGCGGGCGGCCACAGCCTGTTGATGATGGGCCCA
CCCGGTTCGGGCAAAAGCATGTTGGCCCAGCGTTTTGCGGGTTTGTTGCCGCCGATGAGCACGGGTGAAGCGCTGGAATC
GGCAGCGGTGGCGTCTCTCGCGGGCCGGTTCAGCCTGGACCGCTGGGGTCAGCGTCCCACCTGCGCACCCCACCACAGTG
CCAGCGCCGTTGCGCTGGTGGGCGGTGGTTCACCGCCGCGGCCCGGCGAAATCTCGCTCGCCCACCAGGGCGTTCTGTTT
CTGGATGAACTCCCCGAGTTTCCCCGGGCGGCTCTGGAGGCATTGCGCGAACCCCTGGAGAGTGGCCACATCCGCATCTC
GCGTGCGGCCATGCAAAGCGAATTTCCCGCCCGGTTTCAGCTGGTCGCCGCCATGAACCCCTGCCCCTGCGGCTACCTAG
GCCATCCCGCGCGGGCCTGCCGTTGCACGCCCGATCAGATTTTCCGCTACCAGGGCAAGCTCAGCGGTCCGTTGCTGGAC
CGCATCGATCTGCACGTTGAAGTGCCTGCGATTGCATCGGATGATCTGTTGCACGGCGCAGCGGGAGAGGGCAGCGCGGC
GGTTCGTGACCGGGTGGTGGCTGCACGCTGGCGCGCCATGGCGCGACAAGGCCAAAACAACCAGGCGCTGGCGGGCAAGG
CACTGGATGAGCATCTGCACGCTGAAGCGGCGGCACTCACGTTCTTGAACACCGCCTCGACGAGGCTGGGCTGGAGCGCG
CGCAGCACGCACCGCGCGTTGCGCGTGGCGCGCACAATTGCCGATCTGGCTGGAGCCGGTAACGTGACTGCTGCGCACGT
GGCCGAGGCAGTTCAGTACCGGCGGGCATTGCGGCAAAACGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(211-414)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(422-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A162SRP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

50.857

100

0.512
  comM Vibrio campbellii strain DS40M4

50.763

100

0.511
  comM Vibrio cholerae strain A1552

50.763

100

0.511
  comM Glaesserella parasuis strain SC1401

49.13

99.232

0.488
  comM Legionella pneumophila str. Paris

48.177

100

0.482
  comM Legionella pneumophila strain ERS1305867

48.177

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.775

99.616

0.426

Multiple sequence alignment