Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM434_RS13820 Genome accession   NZ_CP021935
Coordinates   2739398..2739874 (-) Length   158 a.a.
NCBI ID   WP_022645117.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2734398..2744874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM434_RS13780 (AM434_13790) cadC 2734483..2736021 (-) 1539 WP_001187191.1 lysine decarboxylation/transport transcriptional activator CadC -
  AM434_RS30185 - 2736281..2736440 (-) 160 Protein_2539 integrase -
  AM434_RS13790 (AM434_13800) - 2736770..2737612 (-) 843 WP_022645115.1 DUF4942 domain-containing protein -
  AM434_RS13795 - 2737697..2737891 (-) 195 WP_024181941.1 DUF957 domain-containing protein -
  AM434_RS29430 - 2737970..2738119 (-) 150 Protein_2542 DUF5983 family protein -
  AM434_RS13800 (AM434_13810) - 2738116..2738493 (-) 378 WP_022645116.1 TA system toxin CbtA family protein -
  AM434_RS13805 (AM434_13815) - 2738583..2738951 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM434_RS13815 (AM434_13825) - 2739114..2739335 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  AM434_RS13820 (AM434_13830) radC 2739398..2739874 (-) 477 WP_022645117.1 RadC family protein Machinery gene
  AM434_RS13825 (AM434_13835) - 2739890..2740369 (-) 480 WP_001564060.1 antirestriction protein -
  AM434_RS13830 (AM434_13840) - 2740635..2741453 (-) 819 WP_001175165.1 DUF932 domain-containing protein -
  AM434_RS13835 (AM434_13845) - 2741543..2741776 (-) 234 WP_022645118.1 DUF905 family protein -
  AM434_RS13840 (AM434_13850) - 2741782..2742459 (-) 678 WP_001097302.1 hypothetical protein -
  AM434_RS13845 (AM434_13855) - 2742607..2743287 (-) 681 WP_001282921.1 WYL domain-containing protein -
  AM434_RS13850 (AM434_13860) - 2743490..2744374 (-) 885 WP_001116795.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17630.26 Da        Isoelectric Point: 7.6151

>NTDB_id=198601 AM434_RS13820 WP_022645117.1 2739398..2739874(-) (radC) [Escherichia coli strain AR_0055]
MQQISFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=198601 AM434_RS13820 WP_022645117.1 2739398..2739874(-) (radC) [Escherichia coli strain AR_0055]
ATGCAACAGATTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGTCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCTGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment