Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | BI282_RS07975 | Genome accession | NZ_CP017428 |
| Coordinates | 1671020..1671466 (-) | Length | 148 a.a. |
| NCBI ID | WP_106421052.1 | Uniprot ID | - |
| Organism | Staphylococcus simulans strain MR3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1640109..1679566 | 1671020..1671466 | within | 0 |
Gene organization within MGE regions
Location: 1640109..1679566
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BI282_RS07760 (BI282_07710) | - | 1640109..1640531 (-) | 423 | WP_106421026.1 | hypothetical protein | - |
| BI282_RS07765 (BI282_07715) | - | 1640531..1641088 (-) | 558 | WP_106421027.1 | ImmA/IrrE family metallo-endopeptidase | - |
| BI282_RS07770 (BI282_07720) | - | 1641505..1641690 (-) | 186 | WP_182475589.1 | hypothetical protein | - |
| BI282_RS07775 | - | 1641692..1641802 (-) | 111 | WP_105976116.1 | hypothetical protein | - |
| BI282_RS07780 | - | 1641876..1642027 (-) | 152 | Protein_1507 | hypothetical protein | - |
| BI282_RS07785 (BI282_07725) | - | 1642398..1642940 (-) | 543 | WP_105976114.1 | hypothetical protein | - |
| BI282_RS07790 (BI282_07730) | - | 1643650..1645122 (-) | 1473 | WP_105976113.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| BI282_RS07795 (BI282_07735) | - | 1645123..1645371 (-) | 249 | WP_105976112.1 | phage holin | - |
| BI282_RS07800 (BI282_07740) | - | 1645511..1645810 (-) | 300 | WP_106421028.1 | DUF2951 family protein | - |
| BI282_RS07805 (BI282_07745) | - | 1645867..1646145 (-) | 279 | WP_105976111.1 | hypothetical protein | - |
| BI282_RS07810 (BI282_07750) | - | 1646151..1648019 (-) | 1869 | WP_105976110.1 | phage tail spike protein | - |
| BI282_RS07815 (BI282_07755) | - | 1648036..1649688 (-) | 1653 | WP_106421029.1 | hypothetical protein | - |
| BI282_RS07820 (BI282_07760) | - | 1649699..1650628 (-) | 930 | WP_106421030.1 | phage tail domain-containing protein | - |
| BI282_RS07825 (BI282_07765) | - | 1650632..1654405 (-) | 3774 | WP_106421031.1 | phage tail protein | - |
| BI282_RS07830 (BI282_07770) | - | 1654428..1654742 (-) | 315 | WP_106421032.1 | hypothetical protein | - |
| BI282_RS07835 (BI282_07775) | - | 1654775..1655233 (-) | 459 | WP_106421033.1 | tail assembly chaperone | - |
| BI282_RS07840 (BI282_07780) | - | 1655301..1655858 (-) | 558 | WP_106421034.1 | phage tail protein | - |
| BI282_RS07845 (BI282_07785) | - | 1655872..1656342 (-) | 471 | WP_106421035.1 | hypothetical protein | - |
| BI282_RS07850 (BI282_07790) | - | 1656357..1656740 (-) | 384 | WP_106421036.1 | HK97 gp10 family phage protein | - |
| BI282_RS07855 (BI282_07795) | - | 1656744..1657067 (-) | 324 | WP_106421037.1 | head-tail adaptor protein | - |
| BI282_RS07860 (BI282_07800) | - | 1657057..1657377 (-) | 321 | WP_105976100.1 | phage head-tail connector protein | - |
| BI282_RS14005 | - | 1657389..1657556 (-) | 168 | WP_182671258.1 | hypothetical protein | - |
| BI282_RS07865 (BI282_07805) | - | 1657574..1658533 (-) | 960 | WP_105976099.1 | phage capsid protein | - |
| BI282_RS07870 (BI282_07810) | - | 1658548..1659117 (-) | 570 | WP_105976098.1 | phage scaffolding protein | - |
| BI282_RS07875 (BI282_07815) | - | 1659221..1660198 (-) | 978 | WP_158257427.1 | phage minor head protein | - |
| BI282_RS07880 (BI282_07820) | - | 1660176..1661576 (-) | 1401 | WP_106421039.1 | phage portal protein | - |
| BI282_RS07885 (BI282_07825) | - | 1661573..1662844 (-) | 1272 | WP_106421040.1 | PBSX family phage terminase large subunit | - |
| BI282_RS07890 (BI282_07830) | - | 1662844..1663221 (-) | 378 | WP_002480794.1 | hypothetical protein | - |
| BI282_RS07895 (BI282_07835) | - | 1663300..1663845 (-) | 546 | WP_106421041.1 | YfbU family protein | - |
| BI282_RS07900 (BI282_07840) | - | 1664042..1664467 (-) | 426 | WP_070548334.1 | transcriptional regulator | - |
| BI282_RS07905 (BI282_07845) | - | 1664594..1664770 (-) | 177 | WP_106421042.1 | transcriptional regulator | - |
| BI282_RS07910 (BI282_07850) | - | 1664773..1665069 (-) | 297 | WP_106421043.1 | hypothetical protein | - |
| BI282_RS07915 (BI282_07855) | - | 1665109..1665617 (-) | 509 | Protein_1535 | dUTPase | - |
| BI282_RS07920 (BI282_07860) | - | 1665614..1665826 (-) | 213 | WP_202617285.1 | hypothetical protein | - |
| BI282_RS07925 (BI282_07865) | - | 1665838..1666098 (-) | 261 | WP_106421045.1 | hypothetical protein | - |
| BI282_RS14220 | - | 1666100..1666231 (-) | 132 | WP_257790908.1 | hypothetical protein | - |
| BI282_RS13910 | - | 1666379..1666555 (-) | 177 | WP_158263702.1 | hypothetical protein | - |
| BI282_RS07930 (BI282_07870) | - | 1666556..1666975 (-) | 420 | WP_105976084.1 | DUF3310 domain-containing protein | - |
| BI282_RS07935 (BI282_07875) | - | 1666976..1667491 (-) | 516 | WP_106421046.1 | hypothetical protein | - |
| BI282_RS07940 (BI282_07880) | - | 1667504..1667695 (-) | 192 | WP_105980080.1 | hypothetical protein | - |
| BI282_RS07945 (BI282_07885) | - | 1667696..1668103 (-) | 408 | WP_106421047.1 | RusA family crossover junction endodeoxyribonuclease | - |
| BI282_RS07955 (BI282_07895) | - | 1668269..1669042 (-) | 774 | WP_060804512.1 | ATP-binding protein | - |
| BI282_RS07960 (BI282_07900) | - | 1669055..1669792 (-) | 738 | WP_106421049.1 | conserved phage C-terminal domain-containing protein | - |
| BI282_RS07965 (BI282_07905) | - | 1669838..1670320 (+) | 483 | WP_106421050.1 | hypothetical protein | - |
| BI282_RS07970 (BI282_07910) | - | 1670336..1671007 (-) | 672 | WP_106421051.1 | putative HNHc nuclease | - |
| BI282_RS07975 (BI282_07915) | ssbA | 1671020..1671466 (-) | 447 | WP_106421052.1 | single-stranded DNA-binding protein | Machinery gene |
| BI282_RS07980 (BI282_07920) | - | 1671466..1672137 (-) | 672 | WP_106421053.1 | ERF family protein | - |
| BI282_RS07985 (BI282_07925) | - | 1672100..1672354 (-) | 255 | WP_106421054.1 | DUF2483 family protein | - |
| BI282_RS07990 (BI282_07930) | - | 1672347..1672571 (-) | 225 | WP_106421055.1 | hypothetical protein | - |
| BI282_RS07995 (BI282_07935) | - | 1672671..1672886 (-) | 216 | WP_106421056.1 | hypothetical protein | - |
| BI282_RS08000 (BI282_07940) | - | 1672899..1673201 (-) | 303 | WP_002480770.1 | DUF771 domain-containing protein | - |
| BI282_RS08005 (BI282_07945) | - | 1673316..1673639 (+) | 324 | WP_106421057.1 | hypothetical protein | - |
| BI282_RS13915 | - | 1673628..1673786 (-) | 159 | WP_159079669.1 | hypothetical protein | - |
| BI282_RS08010 (BI282_07950) | - | 1673833..1674060 (-) | 228 | WP_106421058.1 | hypothetical protein | - |
| BI282_RS08015 (BI282_07955) | - | 1674061..1674834 (-) | 774 | WP_106421059.1 | phage antirepressor KilAC domain-containing protein | - |
| BI282_RS08020 (BI282_07960) | - | 1674950..1675186 (+) | 237 | WP_105976070.1 | hypothetical protein | - |
| BI282_RS14010 | - | 1675179..1675340 (-) | 162 | WP_182477690.1 | hypothetical protein | - |
| BI282_RS08025 (BI282_07965) | - | 1675355..1675594 (-) | 240 | WP_106421060.1 | helix-turn-helix transcriptional regulator | - |
| BI282_RS08030 (BI282_07970) | - | 1675787..1676119 (+) | 333 | WP_105996454.1 | helix-turn-helix transcriptional regulator | - |
| BI282_RS08035 (BI282_07975) | - | 1676133..1676606 (+) | 474 | WP_106421061.1 | ImmA/IrrE family metallo-endopeptidase | - |
| BI282_RS08040 (BI282_07980) | - | 1676611..1677234 (+) | 624 | WP_234016058.1 | DUF4352 domain-containing protein | - |
| BI282_RS14225 | - | 1677425..1677553 (+) | 129 | WP_257791022.1 | hypothetical protein | - |
| BI282_RS08045 (BI282_07985) | - | 1677648..1678163 (+) | 516 | WP_106421062.1 | hypothetical protein | - |
| BI282_RS08050 (BI282_07990) | - | 1678165..1678473 (+) | 309 | WP_106421063.1 | hypothetical protein | - |
| BI282_RS08055 (BI282_07995) | - | 1678538..1679566 (+) | 1029 | WP_106421064.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16698.38 Da Isoelectric Point: 4.9225
>NTDB_id=198042 BI282_RS07975 WP_106421052.1 1671020..1671466(-) (ssbA) [Staphylococcus simulans strain MR3]
MLNRVVLVGRLTKDPEFRTTQSGVDVATFTLAVNRNFKSKNGEQQADFINCVVFRKQAENVNNYLNKGSLAGIDGRLQSR
SYENAEGQRVFVTEVVCDSVQFLEPKNAQASNNNQSNNQVQQREKALQSENPFNNSNNFDMDTDDLPF
MLNRVVLVGRLTKDPEFRTTQSGVDVATFTLAVNRNFKSKNGEQQADFINCVVFRKQAENVNNYLNKGSLAGIDGRLQSR
SYENAEGQRVFVTEVVCDSVQFLEPKNAQASNNNQSNNQVQQREKALQSENPFNNSNNFDMDTDDLPF
Nucleotide
Download Length: 447 bp
>NTDB_id=198042 BI282_RS07975 WP_106421052.1 1671020..1671466(-) (ssbA) [Staphylococcus simulans strain MR3]
ATGTTAAACAGAGTCGTATTAGTAGGTCGCTTAACAAAAGACCCGGAATTCAGAACAACGCAAAGCGGTGTAGATGTAGC
AACATTCACACTAGCAGTCAACCGTAATTTTAAGAGTAAAAACGGAGAGCAGCAGGCGGACTTTATCAACTGTGTTGTAT
TCCGTAAACAAGCAGAAAACGTCAATAATTATTTGAATAAAGGAAGTTTAGCAGGTATCGATGGTCGCTTACAATCACGA
AGTTATGAGAATGCGGAAGGACAAAGAGTATTTGTTACGGAAGTCGTATGTGACAGTGTGCAATTCCTAGAACCTAAGAA
TGCACAAGCCTCAAACAATAACCAATCAAATAACCAAGTGCAGCAAAGAGAGAAGGCGCTTCAAAGCGAAAATCCATTCA
ATAATAGCAACAACTTTGATATGGATACGGATGATTTACCTTTCTAG
ATGTTAAACAGAGTCGTATTAGTAGGTCGCTTAACAAAAGACCCGGAATTCAGAACAACGCAAAGCGGTGTAGATGTAGC
AACATTCACACTAGCAGTCAACCGTAATTTTAAGAGTAAAAACGGAGAGCAGCAGGCGGACTTTATCAACTGTGTTGTAT
TCCGTAAACAAGCAGAAAACGTCAATAATTATTTGAATAAAGGAAGTTTAGCAGGTATCGATGGTCGCTTACAATCACGA
AGTTATGAGAATGCGGAAGGACAAAGAGTATTTGTTACGGAAGTCGTATGTGACAGTGTGCAATTCCTAGAACCTAAGAA
TGCACAAGCCTCAAACAATAACCAATCAAATAACCAAGTGCAGCAAAGAGAGAAGGCGCTTCAAAGCGAAAATCCATTCA
ATAATAGCAACAACTTTGATATGGATACGGATGATTTACCTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.655 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.574 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
71.622 |
0.419 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
38.514 |
100 |
0.385 |
| ssb | Glaesserella parasuis strain SC1401 |
30.601 |
100 |
0.378 |
| ssbA | Streptococcus mutans UA159 |
45.833 |
81.081 |
0.372 |