Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC/comC1   Type   Regulator
Locus tag   WH25_RS10570 Genome accession   NZ_CP017295
Coordinates   171202..171366 (-) Length   54 a.a.
NCBI ID   WP_080998577.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   binding to ComD; induce autophosphorylation of ComD (predicted from homology)   
Competence regulation

Genomic Context

Location: 166202..176366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS00885 (WH25_00885) pth 166984..167553 (-) 570 WP_046164770.1 aminoacyl-tRNA hydrolase -
  WH25_RS00890 (WH25_00890) ychF 167627..168742 (-) 1116 WP_008808030.1 redox-regulated ATPase YchF -
  WH25_RS00905 (WH25_00905) comE/comE2 169064..169831 (-) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  WH25_RS00910 (WH25_00910) comD/comD2 169828..171186 (-) 1359 WP_046165176.1 competence system sensor histidine kinase ComD Regulator
  WH25_RS10570 comC/comC1 171202..171366 (-) 165 WP_080998577.1 bacteriocin Regulator
  WH25_RS00925 (WH25_00925) rlmH 171652..172131 (-) 480 WP_008808034.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  WH25_RS00930 (WH25_00930) htrA 172325..173518 (+) 1194 WP_046164771.1 S1C family serine protease Regulator
  WH25_RS00935 (WH25_00935) spo0J 173584..174348 (+) 765 WP_046164772.1 ParB/RepB/Spo0J family partition protein Regulator
  WH25_RS00940 (WH25_00940) dnaA 174552..175904 (+) 1353 WP_008808037.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6369.44 Da        Isoelectric Point: 11.2504

>NTDB_id=197457 WH25_RS10570 WP_080998577.1 171202..171366(-) (comC/comC1) [Streptococcus gordonii strain IE35]
MKKKNKQNLLPKELQQFEILTDNKLQTVIGGSQKGVYASQRSFVPSWFRKIFRN

Nucleotide


Download         Length: 165 bp        

>NTDB_id=197457 WH25_RS10570 WP_080998577.1 171202..171366(-) (comC/comC1) [Streptococcus gordonii strain IE35]
ATGAAAAAGAAAAACAAACAAAATCTATTGCCAAAAGAGTTACAACAATTTGAAATTTTGACAGATAATAAACTTCAAAC
AGTCATTGGGGGATCTCAAAAAGGTGTTTATGCCAGTCAGAGATCATTTGTTCCAAGTTGGTTCCGTAAAATTTTTAGAA
ATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC/comC1 Streptococcus gordonii str. Challis substr. CH1

55.556

100

0.556
  comC/comC2 Streptococcus gordonii strain NCTC7865

81.25

59.259

0.481

Multiple sequence alignment