Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   WH25_RS00935 Genome accession   NZ_CP017295
Coordinates   173584..174348 (+) Length   254 a.a.
NCBI ID   WP_046164772.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 168584..179348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS00905 (WH25_00905) comE/comE2 169064..169831 (-) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  WH25_RS00910 (WH25_00910) comD/comD2 169828..171186 (-) 1359 WP_046165176.1 competence system sensor histidine kinase ComD Regulator
  WH25_RS10570 comC/comC1 171202..171366 (-) 165 WP_080998577.1 bacteriocin Regulator
  WH25_RS00925 (WH25_00925) rlmH 171652..172131 (-) 480 WP_008808034.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  WH25_RS00930 (WH25_00930) htrA 172325..173518 (+) 1194 WP_046164771.1 S1C family serine protease Regulator
  WH25_RS00935 (WH25_00935) spo0J 173584..174348 (+) 765 WP_046164772.1 ParB/RepB/Spo0J family partition protein Regulator
  WH25_RS00940 (WH25_00940) dnaA 174552..175904 (+) 1353 WP_008808037.1 chromosomal replication initiator protein DnaA -
  WH25_RS00945 (WH25_00945) dnaN 176060..177196 (+) 1137 WP_046164773.1 DNA polymerase III subunit beta -
  WH25_RS00950 (WH25_00950) - 177196..177399 (+) 204 WP_008808039.1 DUF951 domain-containing protein -
  WH25_RS00955 (WH25_00955) - 177418..177936 (-) 519 WP_052721530.1 YehR family protein -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29323.09 Da        Isoelectric Point: 9.6391

>NTDB_id=197399 WH25_RS00935 WP_046164772.1 173584..174348(+) (spo0J) [Streptococcus gordonii strain IE35]
MENYQYILIKDIHTNPYQPRKDFSIEKLNELANSIKENGLIQPIIVRKSSIIGYELLAGERRFRAAKIAGLTEIPALVKS
LSDDEMMKQAIIENLQREDLNPIEEAESYQHLIYKGLTHDEIAQIMGKSRPYITNLVRLLQLPDFVLKAVKEGRISQAHA
RLLIKLKEKDQKKWLEKIISSDISVRKLEKLLQTSPTKPKSENVQKIFIEEEEENLKKLLGVDVKISLSKKQTGKISISF
SNQEEYERIINSLK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=197399 WH25_RS00935 WP_046164772.1 173584..174348(+) (spo0J) [Streptococcus gordonii strain IE35]
ATGGAAAATTATCAATATATTTTAATTAAAGATATTCACACCAATCCCTATCAACCAAGAAAAGATTTTTCAATAGAGAA
ATTAAACGAGTTAGCAAATTCTATTAAAGAAAACGGATTAATTCAGCCTATCATCGTCAGGAAATCATCTATCATTGGAT
ACGAACTTTTAGCTGGGGAAAGACGATTTAGGGCAGCTAAAATAGCAGGTTTAACTGAAATTCCTGCCTTAGTAAAATCA
CTAAGCGATGATGAAATGATGAAGCAGGCTATTATTGAAAATCTTCAAAGAGAGGATCTCAATCCAATAGAAGAAGCTGA
ATCTTATCAACATCTTATTTATAAGGGATTAACGCATGATGAAATCGCTCAGATTATGGGGAAATCAAGGCCTTATATTA
CAAATCTTGTTCGCTTGCTACAGTTACCTGATTTTGTCTTAAAAGCTGTAAAAGAAGGTCGTATTTCTCAGGCTCATGCT
CGATTACTAATAAAACTTAAGGAAAAAGACCAGAAAAAATGGCTTGAAAAAATTATTTCTTCAGATATTTCTGTTAGAAA
ATTAGAGAAATTATTACAAACTTCTCCTACTAAGCCTAAGTCTGAAAATGTCCAAAAAATTTTTATCGAAGAAGAAGAAG
AAAATCTAAAGAAATTATTGGGAGTTGATGTAAAGATTAGTCTCTCTAAGAAACAAACTGGCAAAATCTCAATTTCTTTT
TCTAATCAGGAAGAATATGAAAGAATTATTAACAGTCTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.331

100

0.543

Multiple sequence alignment