Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BFO62_RS10375 Genome accession   NZ_CP017257
Coordinates   1805940..1807436 (-) Length   498 a.a.
NCBI ID   WP_002245890.1    Uniprot ID   A0AB36RVT9
Organism   Neisseria meningitidis strain COL-201504-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1800940..1812436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFO62_RS10335 (BFO62_09330) mraZ 1800955..1801410 (-) 456 WP_002212482.1 division/cell wall cluster transcriptional repressor MraZ -
  BFO62_RS10340 (BFO62_09335) - 1801689..1802906 (+) 1218 WP_076612585.1 class I SAM-dependent methyltransferase -
  BFO62_RS10360 (BFO62_09350) - 1803488..1804309 (-) 822 WP_076612584.1 undecaprenyl-diphosphate phosphatase -
  BFO62_RS10365 (BFO62_09355) dsbA1 1804342..1804986 (-) 645 WP_002255749.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  BFO62_RS10370 (BFO62_09360) ftsN 1804989..1805834 (-) 846 WP_002218775.1 cell division protein FtsN -
  BFO62_RS10375 (BFO62_09365) comM 1805940..1807436 (-) 1497 WP_002245890.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BFO62_RS10380 (BFO62_09370) - 1807450..1807770 (-) 321 WP_002216505.1 accessory factor UbiK family protein -
  BFO62_RS10390 (BFO62_09380) putP 1808253..1809779 (+) 1527 WP_002220352.1 sodium/proline symporter PutP -
  BFO62_RS13285 - 1809869..1810036 (-) 168 WP_009346312.1 hypothetical protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53551.60 Da        Isoelectric Point: 6.9339

>NTDB_id=197014 BFO62_RS10375 WP_002245890.1 1805940..1807436(-) (comM) [Neisseria meningitidis strain COL-201504-11]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECQVPQMPFEHGGQPDLCDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSHRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARDKQYARQGKVNAALSVSELDTSARIQKEAQEALGGLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=197014 BFO62_RS10375 WP_002245890.1 1805940..1807436(-) (comM) [Neisseria meningitidis strain COL-201504-11]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCTTTGAGCGGTATGAATGCGCCGTTGGTTGAAGTAGAAGCCCACCTTGCCAA
CGGCCTGCCGCATTTCAACATCGTCGGGCTGCCCGATACGGAAGTAAAGGAAAGTCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATTACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCGCCCGAAAAACTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCCCATTTGAACGGCATCGAACCTTTGGCGCAAACCGAATGCCAAGTTCCTCAGATGCCGTTTGAACA
TGGCGGACAACCTGATTTGTGCGATGTGAAAGGTCAGCACACCGCGCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGTCCGCCGGGAACGGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTAGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAGCAACAACTCGACAGCCACCGTCC
TTTCCGCAGTCCGCATCACAGCGCCAGTGCGGCGGCTATGGTCGGCGGCGGTTCGGATCCGCGTCCGGGCGAGATTTCAT
TGGCGCACCACGGCGTATTGTTTTTGGACGAGCTGCCCGAGTTCGACCGCAAAGTTTTAGAAGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCGGCGAAATTCCAACTTGTTGCCGCCATGAA
CCCCTGCCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACACCCGAAAGCGTCGCGCGTTACCGCAGCA
AAATTTCCGGCCCGTTGCTTGACCGCATCGATTTGACCATCGAAGTCCCGAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCAGGGGAAAGCAGCGCGTCCGTTTTGGAACGCGTTATCGCCGCTAGAGACAAACAATACGCACGGCAAGGCAAAGT
GAATGCCGCCTTGAGTGTCAGTGAACTCGACACATCCGCCCGCATTCAAAAAGAAGCGCAGGAAGCATTGGGCGGCCTGC
TGGAAAAACTCTCCCTTTCCGCCCGCAGCTTCCACCGCATTATGCGCGTGGCGCGTACATTGGCGGATTTGGCGGGCGAC
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGTTTCCGTCGCGCTTTATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.187

100

0.536
  comM Vibrio campbellii strain DS40M4

52.4

100

0.526
  comM Haemophilus influenzae Rd KW20

50

100

0.504
  comM Glaesserella parasuis strain SC1401

49.008

100

0.496
  comM Legionella pneumophila str. Paris

46.535

100

0.472
  comM Legionella pneumophila strain ERS1305867

46.535

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.829

100

0.438

Multiple sequence alignment