Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   CDH84_RS10125 Genome accession   NZ_CP021771
Coordinates   1945818..1946492 (+) Length   224 a.a.
NCBI ID   WP_237648211.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain B507     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1940818..1951492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH84_RS10105 (CDH84_09990) purE 1941335..1941823 (+) 489 WP_001182531.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  CDH84_RS10110 (CDH84_09995) purK 1941810..1942901 (+) 1092 WP_001084008.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  CDH84_RS10115 (CDH84_10000) - 1942954..1944345 (+) 1392 WP_001079797.1 hypothetical protein -
  CDH84_RS10120 (CDH84_10005) purB 1944367..1945665 (+) 1299 WP_000572890.1 adenylosuccinate lyase -
  CDH84_RS10125 (CDH84_10010) comR 1945818..1946492 (+) 675 WP_237648211.1 XRE family transcriptional regulator Regulator
  CDH84_RS10135 (CDH84_10020) comR 1947333..1947587 (+) 255 WP_239494499.1 hypothetical protein Regulator
  CDH84_RS10140 (CDH84_10025) ruvB 1947788..1948786 (+) 999 WP_000196633.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  CDH84_RS10145 (CDH84_10030) - 1948938..1949375 (+) 438 WP_000754818.1 low molecular weight protein-tyrosine-phosphatase -
  CDH84_RS10150 (CDH84_10035) - 1949382..1949762 (+) 381 WP_000787702.1 membrane protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26212.16 Da        Isoelectric Point: 6.5016

>NTDB_id=196059 CDH84_RS10125 WP_237648211.1 1945818..1946492(+) (comR) [Streptococcus agalactiae strain B507]
MLKHFGSKVRKFRESQQVTREEFCGDESELSVRQLARIEAGESVPNLSKAHYIARNLGVSLDSLTAGASLELSKKYKELK
YLILRTPTYNDTDRLDLIEKYLDEIYLNFYDDLPEDEKIAIESIQSSLDIYISKSHHFGDDLIREYMNQIKRKKIYSIND
LLIIKLWQYKITASRYDPNIFKIDTFIGTIDKLLNQVKVLSIENLFLLRDVLIYSLGILDFLRN

Nucleotide


Download         Length: 675 bp        

>NTDB_id=196059 CDH84_RS10125 WP_237648211.1 1945818..1946492(+) (comR) [Streptococcus agalactiae strain B507]
ATGTTAAAACATTTTGGTAGTAAAGTAAGGAAGTTTAGGGAATCTCAACAGGTGACACGAGAAGAATTTTGTGGCGATGA
ATCAGAGTTATCGGTCCGACAGCTGGCTCGGATTGAAGCAGGAGAATCTGTTCCAAATTTATCTAAGGCGCATTATATCG
CTAGAAATCTAGGAGTTAGTTTAGATTCCTTAACAGCAGGAGCGAGTTTAGAACTGTCAAAAAAATATAAGGAATTAAAG
TATCTTATATTAAGGACGCCTACCTACAATGATACAGATAGACTTGATTTGATTGAAAAATATCTAGATGAGATTTATTT
AAATTTCTATGATGATTTACCTGAAGATGAAAAAATAGCAATTGAGTCCATACAAAGTTCTTTAGATATTTATATTTCTA
AAAGCCATCATTTTGGAGATGACCTGATTAGGGAATACATGAATCAAATTAAACGAAAAAAGATTTACTCTATCAATGAC
TTACTTATAATTAAACTATGGCAATATAAGATTACTGCTAGCAGGTATGATCCCAATATTTTTAAAATAGATACATTTAT
TGGTACTATAGATAAGTTGCTTAATCAAGTAAAGGTATTATCAATTGAAAACCTGTTTTTATTAAGGGATGTCCTCATTT
ATTCGTTAGGTATATTAGACTTCCTGCGAAACTAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

48.402

97.768

0.473
  comR Streptococcus pyogenes MGAS315

48.357

95.089

0.46
  comR Streptococcus pyogenes MGAS8232

47.005

96.875

0.455
  comR Streptococcus suis 05ZYH33

44.7

96.875

0.433
  comR Streptococcus suis P1/7

44.7

96.875

0.433
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

49.733

83.482

0.415
  comR Streptococcus suis D9

38.71

96.875

0.375