Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   A7J08_RS00910 Genome accession   NZ_CP017088
Coordinates   147640..147933 (+) Length   97 a.a.
NCBI ID   WP_053866669.1    Uniprot ID   -
Organism   Streptococcus suis strain SRD478     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 142640..152933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS00880 (A7J08_00875) - 143507..143881 (+) 375 WP_024385120.1 DUF1033 family protein -
  A7J08_RS00885 (A7J08_00880) - 143915..144826 (-) 912 Protein_136 S66 peptidase family protein -
  A7J08_RS00890 (A7J08_00885) comYA 145098..146048 (+) 951 WP_053867353.1 competence type IV pilus ATPase ComGA Machinery gene
  A7J08_RS00895 (A7J08_00890) comYB 145960..146997 (+) 1038 WP_238600014.1 competence type IV pilus assembly protein ComGB Machinery gene
  A7J08_RS00900 (A7J08_00895) comYC 146999..147280 (+) 282 WP_053866667.1 competence type IV pilus major pilin ComGC Machinery gene
  A7J08_RS00905 (A7J08_00900) comGD 147261..147668 (+) 408 WP_053866668.1 competence type IV pilus minor pilin ComGD -
  A7J08_RS00910 (A7J08_00905) comYE 147640..147933 (+) 294 WP_053866669.1 competence type IV pilus minor pilin ComGE Machinery gene
  A7J08_RS00915 (A7J08_00910) comGF/cglF 147920..148354 (+) 435 WP_053866670.1 competence type IV pilus minor pilin ComGF Machinery gene
  A7J08_RS00920 (A7J08_00915) comGG 148332..148745 (+) 414 WP_053866671.1 competence type IV pilus minor pilin ComGG -
  A7J08_RS00925 (A7J08_00920) comYH 148795..149748 (+) 954 WP_053866672.1 class I SAM-dependent methyltransferase Machinery gene
  A7J08_RS00930 (A7J08_00925) - 149798..150985 (+) 1188 WP_053866673.1 acetate kinase -
  A7J08_RS00940 (A7J08_00930) - 151299..151850 (+) 552 WP_053866674.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10787.63 Da        Isoelectric Point: 9.0978

>NTDB_id=195382 A7J08_RS00910 WP_053866669.1 147640..147933(+) (comYE) [Streptococcus suis strain SRD478]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTEQDNLALNGVTVQVQRTAD
KTIVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=195382 A7J08_RS00910 WP_053866669.1 147640..147933(+) (comYE) [Streptococcus suis strain SRD478]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTCGCGACCCTAGTGACTAT
TTGTAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGAGCAAGATAATTTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACAGCAGAT
AAGACGATTGTTTTCCACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

55.67

100

0.557
  comYE Streptococcus mutans UA159

55.67

100

0.557
  comGE/cglE Streptococcus pneumoniae D39

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae TIGR4

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae R6

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae Rx1

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis SK321

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis NCTC 12261

39.13

94.845

0.371
  comGE Lactococcus lactis subsp. cremoris KW2

38.043

94.845

0.361

Multiple sequence alignment