Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   BGL51_RS09075 Genome accession   NZ_CP017064
Coordinates   1714743..1715843 (-) Length   366 a.a.
NCBI ID   WP_120764773.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1709743..1720843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGL51_RS10710 (BGL51_08920) - 1710068..1710343 (-) 276 WP_011681681.1 hypothetical protein -
  BGL51_RS09035 (BGL51_08925) - 1710355..1710552 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  BGL51_RS09040 (BGL51_08930) - 1710801..1711994 (-) 1194 Protein_1685 acetate kinase -
  BGL51_RS09045 (BGL51_08935) comYH 1712050..1713006 (-) 957 WP_095559463.1 class I SAM-dependent methyltransferase Machinery gene
  BGL51_RS09050 (BGL51_08940) comGG 1713051..1713368 (-) 318 WP_095559464.1 competence type IV pilus minor pilin ComGG -
  BGL51_RS09055 (BGL51_08945) comYF 1713346..1713783 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  BGL51_RS09060 (BGL51_08950) comGE 1713767..1714060 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE -
  BGL51_RS09065 (BGL51_08955) comGD 1714032..1714460 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD -
  BGL51_RS09070 (BGL51_08960) comYC 1714420..1714746 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  BGL51_RS09075 (BGL51_08965) comYB 1714743..1715843 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  BGL51_RS09080 (BGL51_08970) comYA 1715725..1716666 (-) 942 WP_084829888.1 competence type IV pilus ATPase ComGA Machinery gene
  BGL51_RS09085 (BGL51_08975) - 1716747..1717109 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41876.03 Da        Isoelectric Point: 10.1377

>NTDB_id=195001 BGL51_RS09075 WP_120764773.1 1714743..1715843(-) (comYB) [Streptococcus thermophilus strain ST3]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=195001 BGL51_RS09075 WP_120764773.1 1714743..1715843(-) (comYB) [Streptococcus thermophilus strain ST3]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCCCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.678

93.443

0.511
  comYB Streptococcus mutans UA159

54.678

93.443

0.511
  comYB Streptococcus gordonii str. Challis substr. CH1

51.17

93.443

0.478
  comGB/cglB Streptococcus mitis NCTC 12261

50.453

90.437

0.456
  comGB/cglB Streptococcus mitis SK321

49.697

90.164

0.448
  comGB/cglB Streptococcus pneumoniae Rx1

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae D39

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae R6

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae TIGR4

49.695

89.617

0.445
  comGB Lactococcus lactis subsp. cremoris KW2

45.758

90.164

0.413

Multiple sequence alignment