Detailed information NTG0194999

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: BGL51_RS09055
• Genome accession: NZ_CP017064
• Coordinates: 1713346..1713783 (-)
• Length: 145 a.a.
• NCBI ID: WP_082309153.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain ST3
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1708346..1718783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BGL51_RS09015 (BGL51_08905)	-	1708410..1709072 (-)	663	WP_023909970.1	CPBP family intramembrane glutamic endopeptidase	-
BGL51_RS09020 (BGL51_08910)	-	1709169..1709612 (-)	444	WP_011681680.1	hypothetical protein	-
BGL51_RS10705 (BGL51_08915)	-	1709686..1710024 (-)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
BGL51_RS10710 (BGL51_08920)	-	1710068..1710343 (-)	276	WP_011681681.1	hypothetical protein	-
BGL51_RS09035 (BGL51_08925)	-	1710355..1710552 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
BGL51_RS09040 (BGL51_08930)	-	1710801..1711994 (-)	1194	Protein_1685	acetate kinase	-
BGL51_RS09045 (BGL51_08935)	comYH	1712050..1713006 (-)	957	WP_095559463.1	class I SAM-dependent methyltransferase	Machinery gene
BGL51_RS09050 (BGL51_08940)	comGG	1713051..1713368 (-)	318	WP_095559464.1	competence type IV pilus minor pilin ComGG	-
BGL51_RS09055 (BGL51_08945)	comYF	1713346..1713783 (-)	438	WP_082309153.1	competence type IV pilus minor pilin ComGF	Machinery gene
BGL51_RS09060 (BGL51_08950)	comGE	1713767..1714060 (-)	294	WP_082309154.1	competence type IV pilus minor pilin ComGE	-
BGL51_RS09065 (BGL51_08955)	comGD	1714032..1714460 (-)	429	WP_253269448.1	competence type IV pilus minor pilin ComGD	-
BGL51_RS09070 (BGL51_08960)	comYC	1714420..1714746 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
BGL51_RS09075 (BGL51_08965)	comYB	1714743..1715843 (-)	1101	WP_120764773.1	competence type IV pilus assembly protein ComGB	Machinery gene
BGL51_RS09080 (BGL51_08970)	comYA	1715725..1716666 (-)	942	WP_084829888.1	competence type IV pilus ATPase ComGA	Machinery gene
BGL51_RS09085 (BGL51_08975)	-	1716747..1717109 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16423.93 Da
• Isoelectric Point: 8.9531

>NTDB_id=194999 BGL51_RS09055 WP_082309153.1 1713346..1713783(-) (comYF) [Streptococcus thermophilus strain ST3]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQYLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=194999 BGL51_RS09055 WP_082309153.1 1713346..1713783(-) (comYF) [Streptococcus thermophilus strain ST3]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTTAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAATACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae D39	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae Rx1	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae R6	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae TIGR4	48.571	96.552	0.469
comGF/cglF	Streptococcus mitis NCTC 12261	47.518	97.241	0.462
comGF/cglF	Streptococcus mitis SK321	46.099	97.241	0.448
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434