Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | BFM96_RS04475 | Genome accession | NZ_CP016953 |
| Coordinates | 926632..927120 (+) | Length | 162 a.a. |
| NCBI ID | WP_068990855.1 | Uniprot ID | A0A917A7J5 |
| Organism | Streptococcus himalayensis strain HTS2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 921632..932120
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFM96_RS04445 | - | 921931..922779 (+) | 849 | WP_068990837.1 | Cof-type HAD-IIB family hydrolase | - |
| BFM96_RS04450 | - | 922776..923372 (+) | 597 | WP_188595295.1 | histidine phosphatase family protein | - |
| BFM96_RS04455 | - | 923369..923947 (+) | 579 | WP_068994174.1 | histidine phosphatase family protein | - |
| BFM96_RS11215 | - | 923969..924127 (-) | 159 | WP_188595294.1 | hypothetical protein | - |
| BFM96_RS04460 | - | 924157..925032 (-) | 876 | WP_068990844.1 | DUF4839 domain-containing protein | - |
| BFM96_RS04465 | - | 925143..926012 (+) | 870 | WP_068990847.1 | CPBP family intramembrane glutamic endopeptidase | - |
| BFM96_RS04470 | rpsF | 926330..926620 (+) | 291 | WP_068990850.1 | 30S ribosomal protein S6 | - |
| BFM96_RS04475 | ssbA | 926632..927120 (+) | 489 | WP_068990855.1 | single-stranded DNA-binding protein | Machinery gene |
| BFM96_RS04480 | rpsR | 927197..927439 (+) | 243 | WP_018371149.1 | 30S ribosomal protein S18 | - |
| BFM96_RS04485 | - | 927951..928427 (+) | 477 | WP_068990861.1 | NUDIX hydrolase | - |
Sequence
Protein
Download Length: 162 a.a. Molecular weight: 18020.91 Da Isoelectric Point: 4.7400
>NTDB_id=194018 BFM96_RS04475 WP_068990855.1 926632..927120(+) (ssbA) [Streptococcus himalayensis strain HTS2]
MINNVVLVGRMTRDAELRYTPQNLAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGALVGVTGRIQTR
NYENQQGQRVYVTEILAESFQLLESRASREGQSGGYTPNNFGSSAPSFGSPEPANQVPNFSRDESPFGATNPMDISDDDL
PF
MINNVVLVGRMTRDAELRYTPQNLAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGALVGVTGRIQTR
NYENQQGQRVYVTEILAESFQLLESRASREGQSGGYTPNNFGSSAPSFGSPEPANQVPNFSRDESPFGATNPMDISDDDL
PF
Nucleotide
Download Length: 489 bp
>NTDB_id=194018 BFM96_RS04475 WP_068990855.1 926632..927120(+) (ssbA) [Streptococcus himalayensis strain HTS2]
ATGATTAATAATGTTGTACTTGTGGGTCGTATGACCCGTGATGCAGAACTTCGTTACACACCACAAAATCTCGCCGTAGC
GACTTTTACACTTGCTGTAAATCGCAATTTTAAAAACCAAAACGGGGAACGGGAAGCAGACTTTATTAACTGTGTCATCT
GGCGTCAACAAGCTGAGAATTTGGCAAATTGGGCTAAGAAGGGTGCTTTGGTAGGCGTGACTGGACGTATCCAGACACGA
AACTATGAAAACCAACAAGGTCAGCGCGTGTATGTAACGGAAATTTTAGCAGAAAGTTTCCAATTATTGGAAAGTCGTGC
TAGCCGTGAAGGTCAATCGGGTGGTTATACACCAAATAATTTTGGTAGTTCAGCACCAAGTTTTGGCAGTCCGGAGCCTG
CAAATCAAGTACCAAACTTTTCTCGTGATGAAAGTCCATTTGGTGCTACCAATCCGATGGATATTTCAGACGATGACCTA
CCATTCTAG
ATGATTAATAATGTTGTACTTGTGGGTCGTATGACCCGTGATGCAGAACTTCGTTACACACCACAAAATCTCGCCGTAGC
GACTTTTACACTTGCTGTAAATCGCAATTTTAAAAACCAAAACGGGGAACGGGAAGCAGACTTTATTAACTGTGTCATCT
GGCGTCAACAAGCTGAGAATTTGGCAAATTGGGCTAAGAAGGGTGCTTTGGTAGGCGTGACTGGACGTATCCAGACACGA
AACTATGAAAACCAACAAGGTCAGCGCGTGTATGTAACGGAAATTTTAGCAGAAAGTTTCCAATTATTGGAAAGTCGTGC
TAGCCGTGAAGGTCAATCGGGTGGTTATACACCAAATAATTTTGGTAGTTCAGCACCAAGTTTTGGCAGTCCGGAGCCTG
CAAATCAAGTACCAAACTTTTCTCGTGATGAAAGTCCATTTGGTGCTACCAATCCGATGGATATTTCAGACGATGACCTA
CCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.636 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.647 |
100 |
0.605 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
57.798 |
67.284 |
0.389 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.432 |
0.377 |
| ssb | Glaesserella parasuis strain SC1401 |
32.086 |
100 |
0.37 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
67.284 |
0.364 |