Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BFM96_RS01395 Genome accession   NZ_CP016953
Coordinates   297148..297642 (-) Length   164 a.a.
NCBI ID   WP_068989400.1    Uniprot ID   A0A917ED94
Organism   Streptococcus himalayensis strain HTS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 268259..306814 297148..297642 within 0


Gene organization within MGE regions


Location: 268259..306814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS01220 - 268259..268645 (-) 387 WP_068989320.1 PBECR2 nuclease fold domain-containing protein -
  BFM96_RS01225 - 268732..269472 (-) 741 Protein_230 CHAP domain-containing protein -
  BFM96_RS11425 - 269444..269578 (-) 135 WP_262981928.1 hypothetical protein -
  BFM96_RS01230 - 269592..269795 (-) 204 WP_068989329.1 phage holin -
  BFM96_RS01235 - 269798..270181 (-) 384 WP_068989332.1 hypothetical protein -
  BFM96_RS01240 - 270192..270458 (-) 267 WP_068989334.1 hypothetical protein -
  BFM96_RS01245 - 270526..272622 (-) 2097 WP_068989337.1 DUF859 domain-containing protein -
  BFM96_RS01250 - 272622..276458 (-) 3837 WP_068989340.1 phage tail spike protein -
  BFM96_RS01255 - 276462..277961 (-) 1500 WP_068989342.1 distal tail protein Dit -
  BFM96_RS01260 - 277958..281671 (-) 3714 WP_068989343.1 tape measure protein -
  BFM96_RS01265 - 281692..282279 (-) 588 WP_068989345.1 Gp15 family bacteriophage protein -
  BFM96_RS01270 - 282279..282647 (-) 369 WP_068989347.1 hypothetical protein -
  BFM96_RS01275 - 282650..283108 (-) 459 WP_068989350.1 phage tail tube protein -
  BFM96_RS01280 - 283113..283520 (-) 408 WP_068989353.1 minor capsid protein -
  BFM96_RS01285 - 283520..283870 (-) 351 WP_068989354.1 minor capsid protein -
  BFM96_RS01290 - 283870..284196 (-) 327 WP_068989357.1 putative minor capsid protein -
  BFM96_RS01295 - 284186..284575 (-) 390 WP_068989360.1 hypothetical protein -
  BFM96_RS01300 - 284612..284866 (-) 255 WP_068989363.1 hypothetical protein -
  BFM96_RS01305 - 284882..285766 (-) 885 WP_068989366.1 phage capsid protein -
  BFM96_RS01310 - 285784..286347 (-) 564 WP_068989369.1 phage scaffolding protein -
  BFM96_RS01315 - 286505..286717 (-) 213 WP_068989372.1 hypothetical protein -
  BFM96_RS01320 - 287082..288224 (-) 1143 Protein_250 phage minor capsid protein -
  BFM96_RS01325 - 288227..288481 (-) 255 WP_373283960.1 hypothetical protein -
  BFM96_RS01330 - 288465..290054 (-) 1590 WP_083201719.1 phage portal protein -
  BFM96_RS01335 - 290066..291379 (-) 1314 WP_068989375.1 PBSX family phage terminase large subunit -
  BFM96_RS01340 - 291366..291809 (-) 444 WP_068989377.1 KGG domain-containing protein -
  BFM96_RS01345 - 292093..292488 (-) 396 WP_068989379.1 hypothetical protein -
  BFM96_RS01350 - 292519..292917 (-) 399 WP_068989382.1 hypothetical protein -
  BFM96_RS01355 - 292917..294014 (-) 1098 WP_068989385.1 DUF4417 domain-containing protein -
  BFM96_RS01360 - 294082..294462 (-) 381 WP_068989388.1 hypothetical protein -
  BFM96_RS01365 - 294596..294850 (-) 255 WP_068994096.1 DUF1372 family protein -
  BFM96_RS01370 - 295096..295410 (-) 315 WP_068989392.1 hypothetical protein -
  BFM96_RS01375 - 295461..296209 (-) 749 Protein_261 DNA-methyltransferase -
  BFM96_RS01380 - 296221..296655 (-) 435 WP_068989394.1 helix-turn-helix domain-containing protein -
  BFM96_RS01385 - 296652..296855 (-) 204 WP_068989396.1 hypothetical protein -
  BFM96_RS01390 - 296857..297132 (-) 276 WP_068989398.1 hypothetical protein -
  BFM96_RS01395 ssbA 297148..297642 (-) 495 WP_068989400.1 single-stranded DNA-binding protein Machinery gene
  BFM96_RS01400 - 297636..297905 (-) 270 WP_068989403.1 hypothetical protein -
  BFM96_RS11300 - 297898..297987 (-) 90 Protein_267 phosphoribosyl-ATP diphosphatase -
  BFM96_RS01405 - 297981..299003 (-) 1023 WP_068989406.1 DUF1351 domain-containing protein -
  BFM96_RS01410 - 299015..299722 (-) 708 WP_068989409.1 ERF family protein -
  BFM96_RS11180 - 299731..299871 (-) 141 WP_188595261.1 hypothetical protein -
  BFM96_RS01415 - 300134..300424 (-) 291 WP_068989411.1 HTH domain-containing protein -
  BFM96_RS01420 - 300537..300872 (-) 336 WP_068989413.1 hypothetical protein -
  BFM96_RS01425 - 301199..301459 (-) 261 WP_068994100.1 hypothetical protein -
  BFM96_RS10735 - 301471..301599 (-) 129 WP_082815638.1 ribbon-helix-helix domain-containing protein -
  BFM96_RS01430 - 301662..302192 (+) 531 WP_068989415.1 hypothetical protein -
  BFM96_RS11185 - 302225..302365 (-) 141 WP_188595262.1 hypothetical protein -
  BFM96_RS10740 - 302383..302511 (-) 129 WP_082815638.1 ribbon-helix-helix domain-containing protein -
  BFM96_RS01435 - 302715..302870 (-) 156 WP_068994103.1 DNA-binding protein -
  BFM96_RS01440 - 303697..304416 (+) 720 WP_068989418.1 XRE family transcriptional regulator -
  BFM96_RS01445 - 304454..305419 (+) 966 WP_068989420.1 DUF3644 domain-containing protein -
  BFM96_RS10745 - 305675..306814 (+) 1140 WP_083201722.1 site-specific integrase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18345.12 Da        Isoelectric Point: 5.1356

>NTDB_id=193991 BFM96_RS01395 WP_068989400.1 297148..297642(-) (ssbA) [Streptococcus himalayensis strain HTS2]
MLNNVVLVGRLTKDAELRYTPSNVAVATFTLAVNRPFKNEAGEREADFINCVIWRQAAENLANWAKKGSLIGITGSIQTR
NYENQQGQRVYVTEVLASHFQLLESRHQQNQGQQQGNYDNQGGNFQSGNNQGYNPSMNTNPQQGSFFQGQTTNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=193991 BFM96_RS01395 WP_068989400.1 297148..297642(-) (ssbA) [Streptococcus himalayensis strain HTS2]
ATGCTAAATAATGTTGTTTTAGTGGGGCGACTTACAAAAGATGCTGAACTGAGATACACGCCCTCAAATGTGGCTGTTGC
CACCTTTACTCTTGCAGTTAATCGCCCTTTTAAAAATGAAGCTGGCGAGCGTGAGGCTGATTTTATCAATTGTGTTATCT
GGCGACAAGCGGCGGAAAATCTTGCAAACTGGGCTAAGAAAGGCTCATTGATTGGCATTACAGGCAGTATCCAGACACGC
AACTATGAAAATCAACAAGGGCAGCGCGTGTATGTGACAGAGGTTCTTGCTAGTCATTTCCAATTATTGGAAAGCAGACA
TCAACAAAATCAAGGACAACAGCAGGGAAATTATGATAATCAAGGTGGCAATTTCCAAAGCGGAAACAATCAAGGCTATA
ATCCATCAATGAATACAAATCCGCAACAAGGGTCATTTTTCCAAGGACAAACCACAAATCCTATGGATATTTCAGATGAT
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.941

72.561

0.384
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.357

68.293

0.378
  ssb Glaesserella parasuis strain SC1401

33.889

100

0.372
  ssb Vibrio cholerae strain A1552

34.286

100

0.366

Multiple sequence alignment