Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BEN76_RS14030 Genome accession   NZ_CP016896
Coordinates   2960928..2962079 (-) Length   383 a.a.
NCBI ID   WP_076033351.1    Uniprot ID   A0A1P8ELJ0
Organism   Acinetobacter soli strain GFJ2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2955928..2967079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN76_RS14010 (BEN76_14010) - 2956506..2957420 (+) 915 WP_004941526.1 DMT family transporter -
  BEN76_RS14015 (BEN76_14015) - 2957658..2958599 (+) 942 WP_004941523.1 LysR substrate-binding domain-containing protein -
  BEN76_RS14020 (BEN76_14020) - 2958908..2959816 (+) 909 WP_076033349.1 outer envelope protein -
  BEN76_RS14025 (BEN76_14025) - 2960316..2960888 (-) 573 WP_076033350.1 L-threonylcarbamoyladenylate synthase -
  BEN76_RS14030 (BEN76_14030) dprA 2960928..2962079 (-) 1152 WP_076033351.1 DNA-processing protein DprA Machinery gene
  BEN76_RS14035 (BEN76_14035) tsaP 2962101..2963243 (-) 1143 WP_076033352.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  BEN76_RS14040 (BEN76_14040) def 2963363..2963887 (+) 525 WP_004944209.1 peptide deformylase -
  BEN76_RS14045 (BEN76_14045) - 2963969..2964400 (+) 432 WP_076033608.1 DUF2946 family protein -
  BEN76_RS14050 (BEN76_14050) - 2964503..2966494 (+) 1992 WP_076033353.1 TonB-dependent copper receptor -
  BEN76_RS17665 - 2966570..2966710 (+) 141 Protein_2722 hypothetical protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41870.39 Da        Isoelectric Point: 6.4070

>NTDB_id=193539 BEN76_RS14030 WP_076033351.1 2960928..2962079(-) (dprA) [Acinetobacter soli strain GFJ2]
MMKQFSAHHRHTIAVWSLVQHSLSSFDTLVRHFGDCETALEPQNLAKWQQLKLHANHLKRAAEYATPAGQAAFSNLLAHI
QQHTDFIVTPEDPLYPAQLMPYTGKPPILFGRGSAQPLLQPQIAVVGSRKPSPHGRQVAYDFAYYLSEKGFYITSGLAHG
IDEAAHQGSVMQQRAIAVVGTGLDRCYPAGNRTLYESIASQGGAVVSEFLPGTPPLKANFPRRNRIVSGLSLGVLVVEAK
EESGSLITANRAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQILEDLALPTHWHAQSTAAVSATSTPEDVSD
ALAVPEELIPLYQRLDWTGQDLDQLAQQFEGSTAELTGQLMELELLGLCIQQSGRYLRCTGGF

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=193539 BEN76_RS14030 WP_076033351.1 2960928..2962079(-) (dprA) [Acinetobacter soli strain GFJ2]
ATGATGAAACAATTTTCTGCGCACCATCGCCATACCATTGCAGTATGGTCATTGGTGCAACACTCACTCTCAAGTTTTGA
TACCTTAGTTCGTCATTTTGGCGATTGTGAAACGGCGCTTGAACCTCAGAATCTGGCCAAGTGGCAACAGTTAAAGCTAC
ATGCCAATCATCTAAAGCGAGCTGCGGAATACGCAACACCAGCGGGGCAAGCGGCATTTTCAAACTTGCTTGCGCACATT
CAGCAGCACACTGATTTTATTGTTACGCCAGAAGATCCACTATATCCTGCCCAGTTGATGCCCTATACCGGCAAGCCCCC
AATTTTATTTGGTCGAGGTTCGGCTCAGCCCTTATTACAGCCACAAATTGCCGTGGTGGGCAGTCGTAAACCCAGCCCAC
ATGGTCGGCAAGTGGCCTATGACTTTGCCTATTACCTCAGTGAAAAAGGATTTTATATCACCAGTGGGCTTGCACACGGC
ATTGATGAAGCAGCCCATCAAGGCAGTGTCATGCAGCAACGGGCGATTGCAGTGGTCGGAACTGGATTGGATCGATGTTA
TCCGGCAGGGAATCGTACATTATACGAGAGTATTGCTTCACAAGGCGGTGCAGTCGTCAGCGAGTTTTTGCCGGGCACAC
CACCGTTAAAGGCCAATTTTCCACGGCGCAACCGTATTGTGAGTGGTTTAAGCTTAGGCGTGTTGGTGGTGGAAGCCAAA
GAAGAAAGTGGCTCACTGATTACCGCGAATCGAGCTGCTGAGCAAGGTAAAACGGTCTTCGCGATTCCGGGACATATTTA
TAGTGAGTTTCATCAAGGCTGCCATCAATTGATTCGAGAAGGAGCAATTTTGGTGGATCATCCGGAGCAAATTCTGGAAG
ATTTAGCGCTTCCCACACATTGGCATGCTCAATCTACGGCAGCAGTCTCGGCCACCTCTACCCCTGAAGATGTATCCGAT
GCCTTGGCTGTTCCCGAAGAGCTGATTCCGCTTTACCAGCGCTTAGACTGGACGGGGCAAGACCTCGACCAGTTGGCGCA
GCAGTTTGAAGGCTCGACCGCAGAGTTGACCGGTCAACTTATGGAACTTGAACTGTTAGGACTGTGCATTCAACAGTCGG
GACGTTATCTGCGTTGTACTGGCGGGTTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(86-286)

DprA winged helix domain (DprA_WH)

(327-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8ELJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baylyi ADP1

74.406

98.956

0.736
  dprA Acinetobacter baumannii strain A118

67.717

99.478

0.674
  dprA Acinetobacter baumannii D1279779

67.717

99.478

0.674
  dprA Neisseria gonorrhoeae MS11

38.624

98.695

0.381
  dprA Neisseria gonorrhoeae strain FA1090

38.36

98.695

0.379
  dprA Haemophilus influenzae Rd KW20

42.988

85.64

0.368

Multiple sequence alignment