Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   BEN15_RS03035 Genome accession   NZ_CP016877
Coordinates   584674..585909 (+) Length   411 a.a.
NCBI ID   WP_065972721.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 579674..590909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS03005 (BEN15_03005) - 580140..582746 (+) 2607 WP_065972719.1 YfhO family protein -
  BEN15_RS03025 (BEN15_03025) - 583291..583974 (-) 684 WP_011226711.1 YoaK family protein -
  BEN15_RS03030 (BEN15_03030) rlmH 583990..584469 (-) 480 WP_002952297.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  BEN15_RS03035 (BEN15_03035) htrA 584674..585909 (+) 1236 WP_065972721.1 S1C family serine protease Regulator
  BEN15_RS03040 (BEN15_03040) spo0J 585975..586742 (+) 768 WP_002948582.1 ParB/RepB/Spo0J family partition protein Regulator
  BEN15_RS03045 (BEN15_03045) dnaA 586982..588346 (+) 1365 WP_065972723.1 chromosomal replication initiator protein DnaA -
  BEN15_RS03050 (BEN15_03050) dnaN 588501..589637 (+) 1137 WP_002948931.1 DNA polymerase III subunit beta -
  BEN15_RS03055 (BEN15_03055) - 589688..589879 (+) 192 WP_002886272.1 DUF951 domain-containing protein -

Sequence


Protein


Download         Length: 411 a.a.        Molecular weight: 42873.08 Da        Isoelectric Point: 4.6014

>NTDB_id=193294 BEN15_RS03035 WP_065972721.1 584674..585909(+) (htrA) [Streptococcus thermophilus strain KLDS 3.1003]
MKKFNWKKIVAPIAMLIIGLLGGLLGAFILLTAAGVSFTNTTDNGVETAKTVYTNITDTTKAVKKVQNAVVSVINYQEGS
SSDSLNDLYGRIFGGGDSSDSSQENSKDSDGLQVAGEGSGVIYKKDGKEAYIVTNNHVVDGAKKLEIMLSDGSKITGELV
GKDTYSDLAVVKVSSDKITTVAEFADSNSLTVGEKAIAIGSPLGTEYANSVTEGIVSSLSRTITMQNDNGETVSTNAIQT
DAAINPGNSGGALVNIEGQVIGINSSKISSTSAVAGSAVEGMGFAIPSNDVVEIINQLEKDGKVTRPALGISIADLNSLS
SSATSKLDLPDEVKSGVVVGSVQKGMPADGKLQEYDVITEIDGKKISSKTDIQTNLYSHSIGDTIKVTFYRGKDKKTVDL
KLTKSTEDISD

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=193294 BEN15_RS03035 WP_065972721.1 584674..585909(+) (htrA) [Streptococcus thermophilus strain KLDS 3.1003]
ATGAAAAAATTTAACTGGAAGAAAATAGTCGCGCCAATTGCAATGCTAATTATTGGCTTACTAGGTGGTTTACTTGGTGC
CTTTATCCTACTAACAGCAGCCGGGGTATCTTTTACCAATACAACAGATAATGGAGTAGAAACGGCTAAGACCGTCTACA
CCAATATAACAGATACAACTAAGGCTGTTAAGAAAGTACAAAATGCCGTTGTTTCTGTCATCAATTATCAAGAAGGTTCA
TCTTCAGATTCACTAAATGACCTTTATGGCCGTATCTTTGGCGGAGGGGACAGTTCTGATTCTAGCCAAGAAAATTCAAA
AGATTCAGATGGTCTACAGGTCGCTGGTGAAGGTTCTGGAGTCATCTATAAAAAAGATGGCAAAGAAGCCTACATCGTAA
CCAATAACCACGTTGTCGATGGGGCTAAAAAACTTGAAATCATGCTTTCGGATGGTTCGAAAATTACTGGTGAACTTGTT
GGTAAAGACACTTACTCTGACCTAGCAGTTGTCAAAGTATCTTCAGATAAAATAACAACTGTTGCAGAATTTGCAGACTC
AAACTCCCTTACTGTTGGTGAAAAAGCAATTGCTATCGGTAGCCCACTTGGTACCGAATACGCCAACTCAGTAACAGAAG
GAATCGTTTCTAGCCTTAGCCGTACTATAACGATGCAAAACGATAATGGTGAAACTGTATCAACAAACGCTATCCAAACA
GATGCAGCCATTAACCCTGGTAACTCTGGTGGTGCCCTAGTCAATATTGAAGGACAAGTTATCGGTATTAACTCAAGTAA
AATTTCATCAACGTCTGCAGTCGCTGGTAGTGCTGTAGAAGGTATGGGGTTTGCCATTCCATCAAACGATGTTGTTGAAA
TCATCAATCAATTAGAAAAAGATGGTAAAGTTACACGACCAGCACTAGGGATCTCAATAGCAGATCTTAATAGCCTTTCT
AGCAGCGCAACTTCTAAATTAGATTTACCAGATGAGGTCAAATCCGGTGTTGTTGTCGGTAGTGTTCAGAAAGGTATGCC
AGCTGACGGTAAACTTCAAGAATATGATGTTATCACTGAGATTGATGGTAAGAAAATCAGCTCAAAAACTGATATTCAAA
CCAATCTTTACAGCCATAGTATCGGAGATACTATCAAGGTAACCTTCTATCGTGGTAAAGATAAGAAAACTGTAGATCTT
AAATTAACAAAATCTACAGAAGACATATCTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.881

98.297

0.608

  htrA Streptococcus gordonii str. Challis substr. CH1

57.282

100

0.574

  htrA Streptococcus mitis NCTC 12261

54.034

99.513

0.538

  htrA Streptococcus pneumoniae TIGR4

53.79

99.513

0.535

  htrA Streptococcus pneumoniae D39

53.79

99.513

0.535

  htrA Streptococcus pneumoniae Rx1

53.79

99.513

0.535

  htrA Streptococcus pneumoniae R6

53.79

99.513

0.535


Multiple sequence alignment