Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   BEN15_RS03040 Genome accession   NZ_CP016877
Coordinates   585975..586742 (+) Length   255 a.a.
NCBI ID   WP_002948582.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 580975..591742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS03025 (BEN15_03025) - 583291..583974 (-) 684 WP_011226711.1 YoaK family protein -
  BEN15_RS03030 (BEN15_03030) rlmH 583990..584469 (-) 480 WP_002952297.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  BEN15_RS03035 (BEN15_03035) htrA 584674..585909 (+) 1236 WP_065972721.1 S1C family serine protease Regulator
  BEN15_RS03040 (BEN15_03040) spo0J 585975..586742 (+) 768 WP_002948582.1 ParB/RepB/Spo0J family partition protein Regulator
  BEN15_RS03045 (BEN15_03045) dnaA 586982..588346 (+) 1365 WP_065972723.1 chromosomal replication initiator protein DnaA -
  BEN15_RS03050 (BEN15_03050) dnaN 588501..589637 (+) 1137 WP_002948931.1 DNA polymerase III subunit beta -
  BEN15_RS03055 (BEN15_03055) - 589688..589879 (+) 192 WP_002886272.1 DUF951 domain-containing protein -
  BEN15_RS03060 (BEN15_03060) ychF 590092..591207 (+) 1116 WP_002948588.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29463.81 Da        Isoelectric Point: 9.6649

>NTDB_id=193295 BEN15_RS03040 WP_002948582.1 585975..586742(+) (spo0J) [Streptococcus thermophilus strain KLDS 3.1003]
MSEQLKTLSISEIYPNPFQPRLKFSDEELVELSQSISENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRNLIDELTYSHEELAKAMGKSRPYISNALRLLQLPREIQTSIENGSLSQG
HARALLAIEDSRKQLTIFQQVVTERWSVRTLEKKLQELPRKQKSKKDTHVKDKEKELERSLGVPITLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=193295 BEN15_RS03040 WP_002948582.1 585975..586742(+) (spo0J) [Streptococcus thermophilus strain KLDS 3.1003]
ATGTCAGAACAACTCAAAACTTTATCTATTAGTGAAATTTACCCCAATCCTTTTCAACCTCGTCTAAAATTCTCCGATGA
AGAGTTAGTAGAACTAAGTCAATCAATATCAGAAAATGGTTTAATACAGCCAATTATTGTACGAAAATCTGACATTATTG
GTTATGAACTAATTGCTGGAGAAAGACGTTTACGAGCCTGTAAACGTTTAGGGATGACAGAAATCCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAGAGTCGTAAACAAGCTATTATTGAAAATCTACAACGATCAAATCTCAATCCTATTGAAGAAGC
AAAGGCCTATCGTAATTTAATTGATGAGTTAACTTATAGTCACGAGGAGCTCGCTAAAGCTATGGGAAAATCTAGACCAT
ATATTAGTAACGCTCTTAGACTACTACAACTTCCGCGAGAGATACAAACGAGTATTGAAAACGGAAGTCTGAGTCAGGGA
CATGCTAGAGCACTCTTAGCTATTGAGGATTCTCGAAAACAGTTAACCATCTTTCAACAGGTTGTGACTGAAAGATGGTC
TGTTCGTACTCTAGAAAAAAAACTTCAGGAACTTCCTAGAAAACAAAAATCTAAAAAAGATACCCATGTAAAAGATAAAG
AAAAAGAACTTGAAAGATCACTAGGTGTCCCTATAACTCTACGTTATCACAAAAATCACTCAGGAACGATTCAAATACAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAAGCTTATCTAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(8-95)

HTH domain found in ParB protein (HTH_ParB)

(147-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.863

100

0.569

Multiple sequence alignment