Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CAY59_RS03770 | Genome accession | NZ_CP021145 |
| Coordinates | 746982..747416 (-) | Length | 144 a.a. |
| NCBI ID | WP_050917749.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain LA16-V1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 741982..752416
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CAY59_RS03750 (CAY59_03710) | coaE | 742484..743098 (-) | 615 | WP_012128880.1 | dephospho-CoA kinase | - |
| CAY59_RS03755 (CAY59_03715) | pilD | 743099..743968 (-) | 870 | WP_045395355.1 | A24 family peptidase | Machinery gene |
| CAY59_RS03760 (CAY59_03720) | - | 744041..745262 (-) | 1222 | Protein_621 | type II secretion system F family protein | - |
| CAY59_RS03765 (CAY59_03725) | pilB | 745297..746982 (-) | 1686 | WP_086368982.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CAY59_RS03770 (CAY59_03730) | pilA | 746982..747416 (-) | 435 | WP_050917749.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| CAY59_RS03780 (CAY59_03740) | nadC | 747682..748569 (-) | 888 | WP_050917751.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| CAY59_RS03785 (CAY59_03745) | ampD | 748662..749213 (+) | 552 | WP_038891990.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| CAY59_RS03790 (CAY59_03750) | pdhR | 749618..750385 (+) | 768 | WP_005428674.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 14971.15 Da Isoelectric Point: 9.4070
>NTDB_id=190653 CAY59_RS03770 WP_050917749.1 746982..747416(-) (pilA) [Vibrio campbellii strain LA16-V1]
MKTNKQKKQQGFTLIELMIVVAIIGVLSAVAIPAYKSYVTKSELASGATTVRNLLTNIDMYQQENGTYATMGLGDVGASA
NMSGLGTLSIPNKTVSTATITFEFTNSSVNGAKITYAKSSSGWTCNIVSGGVAAITSETTPKGC
MKTNKQKKQQGFTLIELMIVVAIIGVLSAVAIPAYKSYVTKSELASGATTVRNLLTNIDMYQQENGTYATMGLGDVGASA
NMSGLGTLSIPNKTVSTATITFEFTNSSVNGAKITYAKSSSGWTCNIVSGGVAAITSETTPKGC
Nucleotide
Download Length: 435 bp
>NTDB_id=190653 CAY59_RS03770 WP_050917749.1 746982..747416(-) (pilA) [Vibrio campbellii strain LA16-V1]
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACGCTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTCTT
GTCTGCAGTAGCTATCCCTGCATACAAGAGCTACGTGACTAAAAGCGAATTAGCATCGGGCGCTACAACTGTCAGAAATC
TCTTAACCAATATCGATATGTACCAACAAGAAAATGGAACATATGCCACGATGGGGCTAGGCGATGTAGGAGCTTCAGCC
AATATGAGCGGCTTAGGTACTCTTAGCATCCCCAACAAAACAGTTAGTACTGCAACTATCACATTTGAGTTTACAAACTC
TTCTGTAAACGGCGCAAAAATCACATACGCAAAATCAAGTTCAGGTTGGACTTGTAATATTGTTTCTGGAGGTGTTGCTG
CTATTACCTCAGAAACCACGCCAAAAGGTTGTTAA
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACGCTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTCTT
GTCTGCAGTAGCTATCCCTGCATACAAGAGCTACGTGACTAAAAGCGAATTAGCATCGGGCGCTACAACTGTCAGAAATC
TCTTAACCAATATCGATATGTACCAACAAGAAAATGGAACATATGCCACGATGGGGCTAGGCGATGTAGGAGCTTCAGCC
AATATGAGCGGCTTAGGTACTCTTAGCATCCCCAACAAAACAGTTAGTACTGCAACTATCACATTTGAGTTTACAAACTC
TTCTGTAAACGGCGCAAAAATCACATACGCAAAATCAAGTTCAGGTTGGACTTGTAATATTGTTTCTGGAGGTGTTGCTG
CTATTACCTCAGAAACCACGCCAAAAGGTTGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.645 |
100 |
0.437 |
| pilA | Vibrio cholerae strain A1552 |
40.645 |
100 |
0.437 |
| pilA | Vibrio cholerae C6706 |
40.645 |
100 |
0.437 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
48.819 |
88.194 |
0.431 |
| pilA | Pseudomonas aeruginosa PAK |
37.255 |
100 |
0.396 |
| pilA | Acinetobacter baumannii strain A118 |
39.007 |
97.917 |
0.382 |