Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BCM40_RS16020 Genome accession   NZ_CP016543
Coordinates   3290169..3290642 (-) Length   157 a.a.
NCBI ID   WP_008427713.1    Uniprot ID   -
Organism   Planococcus donghaensis strain DSM 22276     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3283489..3298041 3290169..3290642 within 0


Gene organization within MGE regions


Location: 3283489..3298041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCM40_RS15990 (BCM40_00220) - 3283489..3284775 (-) 1287 WP_065524985.1 adenylosuccinate synthase -
  BCM40_RS15995 (BCM40_00215) dnaB 3284908..3286263 (-) 1356 WP_065524984.1 replicative DNA helicase -
  BCM40_RS16000 (BCM40_00210) rplI 3286276..3286725 (-) 450 WP_065524983.1 50S ribosomal protein L9 -
  BCM40_RS16005 (BCM40_00205) - 3286722..3288695 (-) 1974 WP_065524982.1 DHH family phosphoesterase -
  BCM40_RS16010 (BCM40_00200) - 3288710..3289669 (-) 960 WP_065524981.1 YybS family protein -
  BCM40_RS16015 (BCM40_00195) rpsR 3289883..3290119 (-) 237 WP_006830564.1 30S ribosomal protein S18 -
  BCM40_RS16020 (BCM40_00190) ssbA 3290169..3290642 (-) 474 WP_008427713.1 single-stranded DNA-binding protein Machinery gene
  BCM40_RS16025 (BCM40_00185) rpsF 3290693..3290980 (-) 288 WP_008427712.1 30S ribosomal protein S6 -
  BCM40_RS16030 (BCM40_00180) - 3291159..3291716 (+) 558 WP_065524980.1 DUF3267 domain-containing protein -
  BCM40_RS16035 (BCM40_00175) - 3291730..3292110 (-) 381 WP_065524979.1 gamma-glutamylcyclotransferase family protein -
  BCM40_RS16040 (BCM40_00170) ychF 3292210..3293310 (-) 1101 WP_065527637.1 redox-regulated ATPase YchF -
  BCM40_RS16045 (BCM40_00165) - 3293399..3293599 (-) 201 WP_065524978.1 DUF951 domain-containing protein -
  BCM40_RS16050 (BCM40_00160) - 3293614..3294507 (-) 894 WP_065524977.1 mechanosensitive ion channel family protein -
  BCM40_RS16055 (BCM40_00155) - 3294527..3295240 (-) 714 WP_065524976.1 DUF554 domain-containing protein -
  BCM40_RS16060 (BCM40_00150) - 3295369..3296202 (-) 834 WP_065524975.1 ParB/RepB/Spo0J family partition protein -
  BCM40_RS16065 (BCM40_00145) - 3296195..3296956 (-) 762 WP_065524974.1 ParA family protein -
  BCM40_RS16070 (BCM40_00140) noc 3297178..3298041 (-) 864 WP_065524973.1 nucleoid occlusion protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17328.95 Da        Isoelectric Point: 4.9561

>NTDB_id=189088 BCM40_RS16020 WP_008427713.1 3290169..3290642(-) (ssbA) [Planococcus donghaensis strain DSM 22276]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGERETDFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKNANTDRSQGQQPSYQQNQSPSPSQQNHTRVDEDPFSSGSGPIEVSDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=189088 BCM40_RS16020 WP_008427713.1 3290169..3290642(-) (ssbA) [Planococcus donghaensis strain DSM 22276]
ATGATTAACCGAGTTGTTTTAGTCGGAAGACTGACAAAAGATCCAGACCTTCGTTACACACCAAGTGGCGCGGCAGTTGC
TCGATTTACACTAGCTGTAAACCGGACTTTCTCAAACGCTCAAGGTGAACGCGAAACTGATTTCATTAATTGTACCGTTT
GGCGCAAACAAGCTGAAAATACAGCGAATTTCCTTAAAAAAGGAAGCTTAGCAGGTGTTGAAGGCCGTATCCAAACTGGT
AGCTACGAGGGACAAGACGGGAAACGTGTCTATACAACAGAAGTAGTGGCGGACAGCGTTCAATTCCTTGAACCAAAAAA
CGCCAATACGGATCGTTCACAAGGCCAGCAGCCTTCCTATCAACAGAACCAATCACCGAGCCCAAGTCAGCAAAACCATA
CTCGTGTAGATGAAGATCCATTCTCAAGCGGTAGCGGCCCGATCGAAGTATCGGATGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.465

100

0.662
  ssb Latilactobacillus sakei subsp. sakei 23K

53.529

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.925

67.516

0.459
  ssb Neisseria gonorrhoeae MS11

36.782

100

0.408
  ssb Neisseria meningitidis MC58

36.047

100

0.395
  ssb Vibrio cholerae strain A1552

33.333

100

0.382

Multiple sequence alignment