Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I858_RS16235 Genome accession   NZ_CP016540
Coordinates   3234490..3234963 (-) Length   157 a.a.
NCBI ID   WP_049693560.1    Uniprot ID   A0A1B1S155
Organism   Planococcus versutus strain L10.15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3229490..3239963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I858_RS16215 (I858_007925) rplI 3230540..3230989 (-) 450 WP_049693564.1 50S ribosomal protein L9 -
  I858_RS16220 (I858_007920) - 3230986..3232962 (-) 1977 WP_049693563.1 DHH family phosphoesterase -
  I858_RS16225 (I858_007915) - 3232977..3233936 (-) 960 WP_049693562.1 YybS family protein -
  I858_RS16230 (I858_007910) rpsR 3234204..3234440 (-) 237 WP_049693561.1 30S ribosomal protein S18 -
  I858_RS16235 (I858_007905) ssbA 3234490..3234963 (-) 474 WP_049693560.1 single-stranded DNA-binding protein Machinery gene
  I858_RS16240 (I858_007900) rpsF 3235014..3235301 (-) 288 WP_049693559.1 30S ribosomal protein S6 -
  I858_RS17640 - 3235478..3235822 (+) 345 WP_338046068.1 metalloprotease family protein -
  I858_RS17645 - 3235871..3236035 (+) 165 WP_338046069.1 hypothetical protein -
  I858_RS16250 (I858_007890) - 3236050..3236430 (-) 381 WP_049693558.1 gamma-glutamylcyclotransferase family protein -
  I858_RS16255 (I858_007885) ychF 3236670..3237770 (-) 1101 WP_049693585.1 redox-regulated ATPase YchF -
  I858_RS16260 (I858_007880) - 3237859..3238059 (-) 201 WP_049693557.1 DUF951 domain-containing protein -
  I858_RS16265 (I858_007875) - 3238074..3238967 (-) 894 WP_049693556.1 mechanosensitive ion channel family protein -
  I858_RS16270 (I858_007870) - 3238987..3239700 (-) 714 WP_049693555.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17271.90 Da        Isoelectric Point: 4.9561

>NTDB_id=189054 I858_RS16235 WP_049693560.1 3234490..3234963(-) (ssbA) [Planococcus versutus strain L10.15]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGERETDFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKSANADRSQGQQPSYQQNQSPSPSQQNHTRVDEDPFSSGSGPIEVSDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=189054 I858_RS16235 WP_049693560.1 3234490..3234963(-) (ssbA) [Planococcus versutus strain L10.15]
ATGATTAACCGAGTTGTTTTAGTCGGAAGACTGACAAAAGATCCAGACCTTCGCTATACACCAAGCGGCGCGGCAGTTGC
TCGTTTTACACTTGCTGTAAACCGGACTTTCTCAAACGCTCAAGGTGAACGCGAAACTGATTTCATTAATTGTACTGTTT
GGCGCAAACAAGCTGAAAATACAGCGAATTTCTTGAAAAAAGGAAGCTTAGCTGGCGTTGAAGGCCGTATCCAAACTGGT
AGCTACGAGGGACAAGACGGGAAGCGTGTCTATACAACAGAAGTAGTGGCGGACAGTGTTCAATTTCTTGAACCGAAAAG
CGCCAATGCGGACCGTTCACAAGGGCAACAGCCTTCCTATCAACAGAACCAATCACCGAGTCCAAGTCAGCAAAATCATA
CTCGTGTAGATGAAGATCCGTTCTCAAGCGGTAGCGGTCCGATAGAAGTATCAGATGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1S155

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.884

100

0.656
  ssb Latilactobacillus sakei subsp. sakei 23K

53.529

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.925

67.516

0.459
  ssb Neisseria gonorrhoeae MS11

36.207

100

0.401
  ssb Neisseria meningitidis MC58

35.465

100

0.389
  ssb Vibrio cholerae strain A1552

33.333

100

0.382

Multiple sequence alignment