Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BBI15_RS16125 Genome accession   NZ_CP016539
Coordinates   3246244..3246732 (-) Length   162 a.a.
NCBI ID   WP_068871151.1    Uniprot ID   -
Organism   Planococcus plakortidis strain DSM 23997     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3241244..3251732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI15_RS16105 (BBI15_11560) - 3241588..3243564 (-) 1977 WP_068871145.1 DHH family phosphoesterase -
  BBI15_RS16110 (BBI15_11565) - 3243579..3244532 (-) 954 WP_068872639.1 YybS family protein -
  BBI15_RS16120 (BBI15_11575) rpsR 3245955..3246191 (-) 237 WP_068871149.1 30S ribosomal protein S18 -
  BBI15_RS16125 (BBI15_11580) ssbA 3246244..3246732 (-) 489 WP_068871151.1 single-stranded DNA-binding protein Machinery gene
  BBI15_RS16130 (BBI15_11585) rpsF 3246784..3247071 (-) 288 WP_068871153.1 30S ribosomal protein S6 -
  BBI15_RS16135 (BBI15_11590) - 3247237..3247788 (+) 552 WP_068872640.1 DUF3267 domain-containing protein -
  BBI15_RS16140 (BBI15_11595) - 3248158..3248541 (-) 384 WP_068871155.1 gamma-glutamylcyclotransferase family protein -
  BBI15_RS16145 (BBI15_11600) ychF 3248669..3249769 (-) 1101 WP_068872641.1 redox-regulated ATPase YchF -
  BBI15_RS16150 (BBI15_11605) - 3249850..3250050 (-) 201 WP_068871157.1 DUF951 domain-containing protein -
  BBI15_RS16155 (BBI15_11610) - 3250066..3250968 (-) 903 WP_335645694.1 mechanosensitive ion channel family protein -
  BBI15_RS16160 (BBI15_11615) - 3250990..3251703 (-) 714 WP_068871159.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17825.43 Da        Isoelectric Point: 5.2688

>NTDB_id=189012 BBI15_RS16125 WP_068871151.1 3246244..3246732(-) (ssbA) [Planococcus plakortidis strain DSM 23997]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEREADFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKSANSGDRSNDRSYGQQPSYQQNQPSSPSQHNNTRVDDDPFSSGSGKIEVSDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=189012 BBI15_RS16125 WP_068871151.1 3246244..3246732(-) (ssbA) [Planococcus plakortidis strain DSM 23997]
ATGATCAACCGGGTTGTATTGGTCGGAAGACTGACAAAAGATCCTGATCTTCGCTACACGCCAAGCGGGGCGGCAGTGGC
CCGTTTTACACTTGCTGTAAACCGGACATTCTCCAATGCGCAAGGTGAACGCGAAGCGGATTTTATCAATTGTACCGTTT
GGCGCAAGCAGGCTGAAAACACAGCGAATTTCCTTAAAAAAGGAAGCCTCGCCGGTGTTGAAGGCCGCATTCAGACTGGC
AGCTACGAGGGTCAGGATGGTAAGCGGGTTTATACGACAGAAGTGGTGGCGGACAGCGTTCAATTCCTTGAACCGAAAAG
CGCCAATTCCGGAGATCGTTCGAACGATCGCTCGTATGGGCAGCAGCCGTCTTATCAACAGAACCAACCGTCTAGTCCAA
GTCAGCATAACAACACTCGTGTAGATGACGATCCGTTCTCAAGCGGAAGCGGGAAGATCGAAGTTTCGGATGACGATCTG
CCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.302

100

0.63
  ssb Latilactobacillus sakei subsp. sakei 23K

56.395

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

68.868

65.432

0.451
  ssb Neisseria meningitidis MC58

34.884

100

0.37
  ssb Neisseria gonorrhoeae MS11

34.884

100

0.37
  ssb Vibrio cholerae strain A1552

33.149

100

0.37

Multiple sequence alignment