Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BBI11_RS16120 Genome accession   NZ_CP016538
Coordinates   3265241..3265735 (-) Length   164 a.a.
NCBI ID   WP_058382281.1    Uniprot ID   A0A1C7DWC7
Organism   Planococcus maritimus strain DSM 17275     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3260241..3270735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI11_RS16100 (BBI11_00760) - 3260567..3262543 (-) 1977 WP_068459463.1 DHH family phosphoesterase -
  BBI11_RS16105 (BBI11_00765) - 3262558..3263526 (-) 969 WP_237150297.1 YybS family protein -
  BBI11_RS16115 (BBI11_00775) rpsR 3264952..3265188 (-) 237 WP_058382282.1 30S ribosomal protein S18 -
  BBI11_RS16120 (BBI11_00780) ssbA 3265241..3265735 (-) 495 WP_058382281.1 single-stranded DNA-binding protein Machinery gene
  BBI11_RS16125 (BBI11_00785) rpsF 3265789..3266076 (-) 288 WP_068459466.1 30S ribosomal protein S6 -
  BBI11_RS16130 (BBI11_00790) - 3266241..3266792 (+) 552 WP_068459468.1 DUF3267 domain-containing protein -
  BBI11_RS16135 (BBI11_00795) - 3267107..3267490 (-) 384 WP_068459471.1 gamma-glutamylcyclotransferase family protein -
  BBI11_RS16140 (BBI11_00800) ychF 3267617..3268717 (-) 1101 WP_068465491.1 redox-regulated ATPase YchF -
  BBI11_RS16145 (BBI11_00805) - 3268798..3268998 (-) 201 WP_068459473.1 DUF951 domain-containing protein -
  BBI11_RS16150 (BBI11_00810) - 3269014..3269874 (-) 861 WP_068465493.1 mechanosensitive ion channel family protein -
  BBI11_RS16155 (BBI11_00815) - 3269939..3270652 (-) 714 WP_068465494.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17960.55 Da        Isoelectric Point: 4.9719

>NTDB_id=188974 BBI11_RS16120 WP_058382281.1 3265241..3265735(-) (ssbA) [Planococcus maritimus strain DSM 17275]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEREADFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKSANSGSGDRSNDRSYGQQPSYQQNQPSSPSQQNNTRVDDDPFSSGSGKIEVSDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=188974 BBI11_RS16120 WP_058382281.1 3265241..3265735(-) (ssbA) [Planococcus maritimus strain DSM 17275]
ATGATCAACCGGGTTGTATTGGTCGGAAGACTGACAAAAGATCCCGATCTTCGTTACACACCAAGCGGCGCGGCGGTGGC
TCGTTTTACACTTGCTGTAAACCGGACATTCTCCAATGCGCAAGGTGAACGCGAAGCGGATTTTATCAATTGTACCGTTT
GGCGCAAGCAGGCTGAAAACACAGCGAATTTCCTCAAAAAAGGAAGTCTCGCCGGTGTCGAAGGCCGCATTCAGACTGGC
AGCTACGAAGGTCAAGATGGCAAGCGCGTTTATACGACGGAAGTGGTGGCTGACAGCGTTCAATTCCTTGAACCAAAAAG
CGCCAACTCCGGATCTGGGGATCGTTCAAACGATCGCTCGTATGGACAGCAGCCGTCTTATCAACAGAACCAACCGTCTA
GTCCAAGTCAGCAAAACAATACTCGTGTAGATGACGATCCGTTTTCAAGCGGAAGCGGGAAGATCGAAGTTTCAGACGAC
GATCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7DWC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.465

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

56.647

100

0.598
  ssbB Bacillus subtilis subsp. subtilis str. 168

68.868

64.634

0.445
  ssb Neisseria gonorrhoeae MS11

35.196

100

0.384
  ssb Vibrio cholerae strain A1552

33.702

100

0.372
  ssb Neisseria meningitidis MC58

34.483

100

0.366

Multiple sequence alignment