Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BBH88_RS18315 Genome accession   NZ_CP016534
Coordinates   3750210..3750683 (-) Length   157 a.a.
NCBI ID   WP_006830563.1    Uniprot ID   A0A1C7DD82
Organism   Planococcus antarcticus DSM 14505     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3745210..3755683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH88_RS18295 (BBH88_03195) rplI 3745974..3746423 (-) 450 WP_006830568.1 50S ribosomal protein L9 -
  BBH88_RS18300 (BBH88_03190) - 3746420..3748396 (-) 1977 WP_006830567.1 DHH family phosphoesterase -
  BBH88_RS18305 (BBH88_03185) - 3748411..3749370 (-) 960 WP_006830566.1 YybS family protein -
  BBH88_RS18310 (BBH88_03175) rpsR 3749924..3750160 (-) 237 WP_006830564.1 30S ribosomal protein S18 -
  BBH88_RS18315 (BBH88_03170) ssbA 3750210..3750683 (-) 474 WP_006830563.1 single-stranded DNA-binding protein Machinery gene
  BBH88_RS18320 (BBH88_03165) rpsF 3750735..3751022 (-) 288 WP_006830562.1 30S ribosomal protein S6 -
  BBH88_RS18325 (BBH88_03160) - 3751199..3751756 (+) 558 WP_065536336.1 DUF3267 domain-containing protein -
  BBH88_RS18330 (BBH88_03155) - 3751770..3752150 (-) 381 WP_006830560.1 gamma-glutamylcyclotransferase -
  BBH88_RS18335 (BBH88_03150) ychF 3752498..3753598 (-) 1101 WP_006830559.1 redox-regulated ATPase YchF -
  BBH88_RS18340 (BBH88_03145) - 3753687..3753887 (-) 201 WP_006830558.1 DUF951 domain-containing protein -
  BBH88_RS18345 (BBH88_03140) - 3753905..3754795 (-) 891 WP_006830557.1 mechanosensitive ion channel family protein -
  BBH88_RS18350 (BBH88_03135) - 3754814..3755527 (-) 714 WP_006830556.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17252.86 Da        Isoelectric Point: 4.9561

>NTDB_id=188901 BBH88_RS18315 WP_006830563.1 3750210..3750683(-) (ssbA) [Planococcus antarcticus DSM 14505]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGERETDFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKSANTDRSQGQQPSNQQNQSPSPSQQNHTRVDEDPFSSGSGPIEVSDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=188901 BBH88_RS18315 WP_006830563.1 3750210..3750683(-) (ssbA) [Planococcus antarcticus DSM 14505]
ATGATTAACCGAGTTGTTTTAGTCGGAAGACTGACAAAAGATCCAGATCTTCGTTACACACCAAGCGGCGCTGCAGTTGC
TCGCTTTACACTTGCTGTAAACCGGACATTCTCGAACGCTCAAGGTGAACGCGAAACTGATTTCATTAATTGTACCGTTT
GGCGCAAACAAGCTGAAAACACAGCGAATTTCCTGAAAAAAGGAAGTTTGGCTGGCGTTGAAGGCCGAATCCAGACAGGT
AGCTACGAGGGACAAGACGGGAAACGCGTTTATACGACAGAAGTAGTGGCAGATAGTGTTCAATTCCTTGAACCGAAAAG
CGCCAATACGGACCGTTCACAAGGACAGCAGCCTTCCAATCAACAGAACCAATCACCGAGCCCAAGTCAGCAAAACCATA
CTCGTGTAGACGAAGATCCATTCTCGAGTGGCAGCGGTCCGATCGAAGTATCGGATGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7DD82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.465

100

0.662
  ssb Latilactobacillus sakei subsp. sakei 23K

54.386

100

0.592
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.925

67.516

0.459
  ssb Neisseria gonorrhoeae MS11

35.632

100

0.395
  ssb Vibrio cholerae strain A1552

33.333

100

0.382
  ssb Neisseria meningitidis MC58

34.104

100

0.376

Multiple sequence alignment