Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BSY15_RS08230 Genome accession   NZ_CP016447
Coordinates   1857761..1859305 (-) Length   514 a.a.
NCBI ID   WP_069104395.1    Uniprot ID   A0A1B3PHC9
Organism   Acidovorax sp. RAC01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1852761..1864305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSY15_RS08210 (BSY15_1661) - 1853302..1855197 (-) 1896 WP_069104392.1 feruloyl-CoA synthase -
  BSY15_RS08215 (BSY15_1662) - 1855247..1856032 (-) 786 WP_069104393.1 crotonase/enoyl-CoA hydratase family protein -
  BSY15_RS08220 (BSY15_1663) - 1856190..1857086 (+) 897 WP_069104394.1 amidohydrolase family protein -
  BSY15_RS08225 (BSY15_1664) - 1857087..1857554 (-) 468 WP_069106491.1 MarR family transcriptional regulator -
  BSY15_RS08230 (BSY15_1665) comM 1857761..1859305 (-) 1545 WP_069104395.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BSY15_RS08235 (BSY15_1666) - 1859521..1860231 (+) 711 WP_069104396.1 TorF family putative porin -
  BSY15_RS08240 (BSY15_1667) glnK 1860278..1860616 (+) 339 WP_015012094.1 P-II family nitrogen regulator -
  BSY15_RS08245 (BSY15_1668) amt 1860649..1862202 (+) 1554 WP_069104397.1 ammonium transporter -
  BSY15_RS08250 (BSY15_1669) glcE 1862438..1863556 (+) 1119 WP_069104398.1 glycolate oxidase subunit GlcE -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 53491.11 Da        Isoelectric Point: 7.8537

>NTDB_id=188318 BSY15_RS08230 WP_069104395.1 1857761..1859305(-) (comM) [Acidovorax sp. RAC01]
MSLALVQSRALLGLQAPAVTVEVHLANGLPSFTLVGLAEVEVKEARERVRSALQNAGLEFPHNKRITVNLAPADLPKDSG
RFDLPIAMGILAASGQVDAARLAGFEFAGELSLSGELRPVRGALATSLALQTQQVTSCLVLPPGSAEEAALVPDARVVRA
THLLDVVRAFLPPGSAQGGDADVPNDGWTPLRATPMAAHHGGPDMADVKGQASAKRALEIAAAGGHSVLMAGPPGSGKSM
LAHRFAGLLPAMTVQEALESAAIASLAGRFDPGAWGQRPTGSPHHTASAVALVGGGSPPRPGEISLAHNGVLFLDELPEF
PRAALEALREPLETGHITIARAAQRADYPARFQLIAAMNPCPCGFQGSPLRACRCTPDQVSRYQAKLSGPLLDRIDLHFE
VPALPAEQLVKAPAGEGSASIRARVEAARSRAVARQGKPNQALQGQEIDAHVLLADTAAAFLSTAAARLGWSARSTHRAL
KVARTVADLAGSETTEVSHVAEAVQYRRVLRAPA

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=188318 BSY15_RS08230 WP_069104395.1 1857761..1859305(-) (comM) [Acidovorax sp. RAC01]
ATGAGTCTTGCATTGGTGCAAAGCCGCGCCCTTCTGGGGCTGCAGGCGCCCGCCGTCACCGTGGAGGTGCACCTGGCCAA
TGGCCTGCCCAGCTTCACGCTGGTGGGCCTGGCCGAGGTCGAAGTGAAGGAGGCGCGCGAACGCGTGCGCTCGGCCCTGC
AGAACGCGGGGCTGGAGTTCCCGCACAACAAGCGCATCACGGTGAACCTGGCCCCGGCAGACCTGCCCAAGGACTCGGGC
CGGTTCGACCTGCCGATCGCCATGGGCATCCTGGCGGCCAGCGGGCAGGTGGACGCAGCGCGCCTGGCCGGGTTTGAATT
TGCGGGCGAGCTCTCGCTGTCGGGCGAGCTGCGGCCCGTGCGCGGCGCGCTGGCCACCAGTCTGGCGCTGCAGACGCAGC
AGGTCACGTCGTGCCTGGTGCTGCCCCCGGGCAGTGCCGAAGAAGCCGCGCTGGTGCCCGACGCCCGGGTAGTGCGCGCC
ACGCACCTGCTGGACGTGGTGCGCGCGTTTTTACCGCCCGGCAGCGCGCAGGGTGGCGACGCAGACGTGCCCAACGACGG
CTGGACCCCGCTGCGCGCAACGCCCATGGCGGCGCACCACGGCGGGCCCGACATGGCAGATGTCAAAGGCCAGGCGTCGG
CCAAGCGCGCACTGGAGATCGCCGCCGCAGGCGGCCACAGCGTGCTGATGGCGGGCCCGCCCGGCTCGGGCAAGTCGATG
CTGGCCCACCGCTTTGCCGGCCTGCTGCCCGCCATGACGGTGCAGGAGGCGCTGGAAAGCGCAGCCATTGCCAGCCTGGC
GGGGCGGTTTGACCCCGGTGCCTGGGGCCAGCGCCCCACGGGCTCGCCGCACCACACGGCCAGCGCCGTGGCCCTGGTGG
GCGGTGGCTCGCCACCCCGGCCGGGCGAGATCTCGCTGGCCCACAACGGCGTGCTGTTTCTCGACGAACTGCCCGAGTTC
CCGCGCGCCGCGCTCGAAGCCCTGCGCGAGCCGCTGGAGACCGGCCATATCACCATCGCCCGGGCGGCGCAGCGGGCCGA
CTACCCGGCGCGCTTTCAGCTGATTGCGGCCATGAATCCGTGCCCCTGCGGCTTTCAGGGCTCGCCCCTGCGGGCCTGCC
GCTGCACGCCTGATCAGGTCAGCCGCTACCAGGCCAAGCTGAGCGGGCCGCTGCTGGACCGCATCGACCTGCACTTTGAG
GTGCCCGCGCTGCCGGCCGAACAGCTGGTCAAGGCCCCGGCGGGCGAGGGCTCGGCCAGCATCCGGGCGCGGGTGGAGGC
AGCCCGCAGTCGCGCGGTGGCCCGCCAGGGCAAACCCAACCAGGCGCTGCAGGGCCAGGAGATCGATGCGCATGTGCTGC
TGGCCGATACGGCCGCCGCGTTCCTCAGCACGGCCGCTGCACGCCTCGGGTGGTCTGCCCGCAGCACGCACCGGGCGCTG
AAGGTGGCGCGCACGGTGGCCGACCTGGCCGGCAGCGAAACCACCGAAGTCAGCCATGTGGCCGAGGCCGTGCAGTACCG
CCGGGTGCTGCGCGCACCGGCATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3PHC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.445

100

0.519
  comM Vibrio cholerae strain A1552

51.758

99.611

0.516
  comM Glaesserella parasuis strain SC1401

50.581

100

0.508
  comM Vibrio campbellii strain DS40M4

50.292

99.805

0.502
  comM Legionella pneumophila str. Paris

48.269

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.269

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.054

100

0.422

Multiple sequence alignment