Detailed information NTG0187844

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: BBD27_RS05175
• Genome accession: NZ_CP016394
• Coordinates: 970259..970687 (+)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain ND07
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 965259..975687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BBD27_RS05155 (BBD27_1006)	-	967610..967972 (+)	363	WP_014622006.1	DUF1033 family protein	-
BBD27_RS05160 (BBD27_1007)	comGA/cglA/cilD	968053..968994 (+)	942	WP_022096896.1	competence type IV pilus ATPase ComGA	Machinery gene
BBD27_RS05165 (BBD27_1008)	comYB	968876..969976 (+)	1101	WP_120764773.1	competence type IV pilus assembly protein ComGB	Machinery gene
BBD27_RS05170 (BBD27_1009)	comYC	969973..970299 (+)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
BBD27_RS05175 (BBD27_1010)	comYD	970259..970687 (+)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
BBD27_RS05180	comGE	970659..970952 (+)	294	WP_024704238.1	competence type IV pilus minor pilin ComGE	-
BBD27_RS05185 (BBD27_1012)	comYF	970936..971373 (+)	438	WP_011681686.1	competence type IV pilus minor pilin ComGF	Machinery gene
BBD27_RS05190 (BBD27_1013)	comGG	971351..971668 (+)	318	WP_011681685.1	competence type IV pilus minor pilin ComGG	-
BBD27_RS05195 (BBD27_1014)	comYH	971713..972669 (+)	957	WP_011681684.1	class I SAM-dependent methyltransferase	Machinery gene
BBD27_RS05200 (BBD27_1015)	-	972725..973918 (+)	1194	WP_014608740.1	acetate kinase	-
BBD27_RS05205	-	974167..974365 (+)	199	Protein_966	helix-turn-helix transcriptional regulator	-
BBD27_RS11455 (BBD27_1017)	-	974377..974652 (+)	276	WP_011681681.1	hypothetical protein	-
BBD27_RS11460 (BBD27_1018)	-	974696..975034 (+)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
BBD27_RS05220 (BBD27_1019)	-	975108..975551 (+)	444	WP_011681680.1	hypothetical protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=187844 BBD27_RS05175 WP_011226626.1 970259..970687(+) (comYD) [Streptococcus thermophilus strain ND07]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=187844 BBD27_RS05175 WP_011226626.1 970259..970687(+) (comYD) [Streptococcus thermophilus strain ND07]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCGAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38