Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | BA891_RS04505 | Genome accession | NZ_CP016347 |
| Coordinates | 982265..982549 (+) | Length | 94 a.a. |
| NCBI ID | WP_065303068.1 | Uniprot ID | - |
| Organism | Vibrio natriegens strain CCUG 16371 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 977265..987549
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA891_RS04495 (BA891_04495) | - | 979742..980014 (+) | 273 | WP_014231223.1 | HU family DNA-binding protein | - |
| BA891_RS04500 (BA891_04500) | ppiD | 980218..982077 (+) | 1860 | WP_065302116.1 | peptidylprolyl isomerase | - |
| BA891_RS04505 (BA891_04505) | comEA | 982265..982549 (+) | 285 | WP_065303068.1 | ComEA family DNA-binding protein | Machinery gene |
| BA891_RS04510 (BA891_04510) | rrtA | 982632..983183 (-) | 552 | WP_020336146.1 | rhombosortase | - |
| BA891_RS04515 (BA891_04515) | - | 983187..983810 (+) | 624 | WP_065296543.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| BA891_RS04520 (BA891_04520) | - | 983807..985129 (-) | 1323 | WP_065302117.1 | anti-phage deoxyguanosine triphosphatase | - |
| BA891_RS04525 (BA891_04525) | yfbR | 985153..985737 (-) | 585 | WP_014231229.1 | 5'-deoxynucleotidase | - |
| BA891_RS04530 (BA891_04530) | - | 985828..987042 (-) | 1215 | WP_014231230.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10168.75 Da Isoelectric Point: 5.0773
>NTDB_id=187154 BA891_RS04505 WP_065303068.1 982265..982549(+) (comEA) [Vibrio natriegens strain CCUG 16371]
MKWVLTLLLCVFAPFGLAADTTADKYEGIEITVNINSATAEEIATMLKGIGDKKAQDIVDYRTEHGPFKTVSDLGNVKGI
GDATLKKNEGRIIL
MKWVLTLLLCVFAPFGLAADTTADKYEGIEITVNINSATAEEIATMLKGIGDKKAQDIVDYRTEHGPFKTVSDLGNVKGI
GDATLKKNEGRIIL
Nucleotide
Download Length: 285 bp
>NTDB_id=187154 BA891_RS04505 WP_065303068.1 982265..982549(+) (comEA) [Vibrio natriegens strain CCUG 16371]
ATGAAATGGGTTTTAACTTTATTGTTATGTGTATTTGCACCGTTTGGGTTGGCAGCAGATACAACAGCGGATAAATATGA
AGGAATTGAAATTACCGTAAACATCAATTCAGCGACAGCAGAAGAGATTGCAACAATGCTTAAAGGGATTGGTGACAAGA
AAGCGCAAGATATTGTCGATTATCGTACCGAGCATGGTCCATTTAAAACAGTGAGTGACCTGGGGAATGTTAAGGGAATC
GGAGATGCTACTTTGAAGAAAAACGAAGGTCGCATCATCCTCTAG
ATGAAATGGGTTTTAACTTTATTGTTATGTGTATTTGCACCGTTTGGGTTGGCAGCAGATACAACAGCGGATAAATATGA
AGGAATTGAAATTACCGTAAACATCAATTCAGCGACAGCAGAAGAGATTGCAACAATGCTTAAAGGGATTGGTGACAAGA
AAGCGCAAGATATTGTCGATTATCGTACCGAGCATGGTCCATTTAAAACAGTGAGTGACCTGGGGAATGTTAAGGGAATC
GGAGATGCTACTTTGAAGAAAAACGAAGGTCGCATCATCCTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
81.915 |
100 |
0.819 |
| comEA | Vibrio campbellii strain DS40M4 |
70.526 |
100 |
0.713 |
| comEA | Vibrio cholerae C6706 |
57.447 |
100 |
0.574 |
| comEA | Vibrio cholerae strain A1552 |
57.447 |
100 |
0.574 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.452 |
65.957 |
0.372 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.957 |
0.372 |