Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   A6J72_RS05930 Genome accession   NZ_CP020433
Coordinates   1194448..1195041 (+) Length   197 a.a.
NCBI ID   WP_082312000.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1189448..1200041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS05905 (A6J72_05915) - 1190050..1190508 (-) 459 WP_009569658.1 DUF3021 domain-containing protein -
  A6J72_RS05910 (A6J72_05920) brsR 1190505..1190945 (-) 441 WP_041823295.1 LytTR family DNA-binding domain-containing protein Regulator
  A6J72_RS05915 (A6J72_05925) hexB 1191187..1193133 (+) 1947 WP_082311997.1 DNA mismatch repair endonuclease MutL Machinery gene
  A6J72_RS05920 (A6J72_05930) - 1193279..1193788 (-) 510 WP_082311998.1 RDD family protein -
  A6J72_RS05925 (A6J72_05935) - 1193772..1194278 (-) 507 WP_082311999.1 helix-turn-helix domain-containing protein -
  A6J72_RS05930 (A6J72_05940) ruvA 1194448..1195041 (+) 594 WP_082312000.1 Holliday junction branch migration protein RuvA Machinery gene
  A6J72_RS05935 (A6J72_05945) - 1195051..1195605 (+) 555 WP_082312001.1 DNA-3-methyladenine glycosylase I -
  A6J72_RS10035 (A6J72_05950) - 1195610..1195783 (+) 174 Protein_1144 CPBP family intramembrane glutamate endopeptidase -
  A6J72_RS05945 (A6J72_05955) cinA 1195920..1197188 (+) 1269 WP_009569648.1 competence/damage-inducible protein A Machinery gene
  A6J72_RS05950 (A6J72_05960) recA 1197237..1198382 (+) 1146 WP_003077215.1 recombinase RecA Machinery gene
  A6J72_RS05955 (A6J72_05965) spx 1198468..1198866 (+) 399 WP_003026638.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21726.20 Da        Isoelectric Point: 5.7634

>NTDB_id=186428 A6J72_RS05930 WP_082312000.1 1194448..1195041(+) (ruvA) [Streptococcus intermedius strain FDAARGOS_233]
MYEYFKGIISKITAKYIVLEVNSIGYILHVANPYAYSGRLHQEAKVYVHQVVREDAELLYGFAIEEEKQLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVIAGDDLSAKAAVQASNENQELEEAMEAM
LALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=186428 A6J72_RS05930 WP_082312000.1 1194448..1195041(+) (ruvA) [Streptococcus intermedius strain FDAARGOS_233]
ATGTACGAATATTTTAAAGGAATCATCAGTAAAATCACAGCCAAGTACATTGTATTGGAAGTAAACTCTATCGGCTATAT
TCTTCATGTGGCCAACCCCTATGCATACTCAGGGCGTCTTCATCAGGAAGCTAAGGTCTATGTGCACCAGGTGGTGAGAG
AAGATGCAGAGCTCCTGTACGGTTTTGCGATCGAGGAGGAGAAGCAACTCTTTCTCAGCTTGATTTCAGTCTCAGGTATT
GGCCCAGTGTCTGCCCTGGCTATCATTGCTGCAGATGATAATGCTGGCTTGGTACAAGCTATTGAGCAAAAAAATATCAC
CTACCTAACCAAGTTTCCTAAGATTGGTAAGAAAACAGCCCAGCAGATGGTGCTAGACTTGGAAGGTAAGGTGGTAATAG
CTGGTGACGATCTTTCTGCCAAGGCTGCAGTGCAAGCTAGCAATGAAAACCAAGAACTGGAAGAAGCCATGGAAGCCATG
CTGGCTCTGGGATACAAGGCTGCTGAACTTAAGAAAATCAAGAAATTCTTTGAAGGCACGACGGATACAGCAGAAAACTA
TATAAAGTCAGCTCTCAAGATGTTAGTGAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

89.34

100

0.893
  ruvA Streptococcus pneumoniae R6

88.832

100

0.888
  ruvA Streptococcus pneumoniae D39

88.832

100

0.888
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411

Multiple sequence alignment