Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | BA177_RS14085 | Genome accession | NZ_CP016268 |
| Coordinates | 3115444..3116664 (+) | Length | 406 a.a. |
| NCBI ID | WP_068617240.1 | Uniprot ID | A0A193LI41 |
| Organism | Woeseia oceani strain XK5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3110444..3121664
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA177_RS14065 (BA177_14065) | pilR | 3110769..3112085 (+) | 1317 | WP_068617232.1 | sigma-54 dependent transcriptional regulator | Regulator |
| BA177_RS19190 (BA177_14070) | - | 3112337..3112798 (+) | 462 | Protein_2752 | pilin | - |
| BA177_RS14075 (BA177_14075) | - | 3113013..3113516 (+) | 504 | WP_068617235.1 | pilin | - |
| BA177_RS14080 (BA177_14080) | pilB | 3113688..3115409 (+) | 1722 | WP_068617238.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BA177_RS14085 (BA177_14085) | pilC | 3115444..3116664 (+) | 1221 | WP_068617240.1 | type II secretion system F family protein | Machinery gene |
| BA177_RS14090 (BA177_14090) | pilD | 3116754..3117638 (+) | 885 | WP_068617245.1 | A24 family peptidase | Machinery gene |
| BA177_RS14095 (BA177_14095) | coaE | 3117654..3118277 (+) | 624 | WP_068617251.1 | dephospho-CoA kinase | - |
| BA177_RS14100 (BA177_14100) | zapD | 3118358..3119146 (+) | 789 | WP_197493069.1 | cell division protein ZapD | - |
| BA177_RS14105 (BA177_14105) | mutT | 3119168..3119578 (-) | 411 | WP_082990125.1 | 8-oxo-dGTP diphosphatase MutT | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 43766.33 Da Isoelectric Point: 5.8821
>NTDB_id=186428 BA177_RS14085 WP_068617240.1 3115444..3116664(+) (pilC) [Woeseia oceani strain XK5]
MAESAVANSTPFLWEGTDRKGNKIKGKAMAANEAAVRADLRRQGVVPSRIKKQSKGLFSGSAKITMGDIAIFSRQLATML
SAGIPLVQAFEIVGSGHENAAMQKLIMTIKADVEGGSALAEALAKHPLYFDDLFINLVEAGEQAGALETLLDKIATYKEK
TEAIKKKIKKALTYPAAVLVVAFVVTVILLIFVIPAFEDLFQGFGADLPAFTQVVIDLSKFVRDQGWMLALAGFAAVSAF
LYFKKRSRAMREFLDRMALKTPIIGPIIQKAAIARYARTLSTMFSAGVPLVEALESVAGATGNIVYEVGVLHMKDEVSTG
QRLQQAMENTDLFPNMVIQMIAVGEESGSLDEMSAKVADFYEEDVDNAVDNLSSLLEPMIMAILGVLVGGLVIAMYLPIF
KMGAVV
MAESAVANSTPFLWEGTDRKGNKIKGKAMAANEAAVRADLRRQGVVPSRIKKQSKGLFSGSAKITMGDIAIFSRQLATML
SAGIPLVQAFEIVGSGHENAAMQKLIMTIKADVEGGSALAEALAKHPLYFDDLFINLVEAGEQAGALETLLDKIATYKEK
TEAIKKKIKKALTYPAAVLVVAFVVTVILLIFVIPAFEDLFQGFGADLPAFTQVVIDLSKFVRDQGWMLALAGFAAVSAF
LYFKKRSRAMREFLDRMALKTPIIGPIIQKAAIARYARTLSTMFSAGVPLVEALESVAGATGNIVYEVGVLHMKDEVSTG
QRLQQAMENTDLFPNMVIQMIAVGEESGSLDEMSAKVADFYEEDVDNAVDNLSSLLEPMIMAILGVLVGGLVIAMYLPIF
KMGAVV
Nucleotide
Download Length: 1221 bp
>NTDB_id=186428 BA177_RS14085 WP_068617240.1 3115444..3116664(+) (pilC) [Woeseia oceani strain XK5]
ATGGCGGAATCAGCGGTTGCTAACAGTACGCCTTTCCTTTGGGAAGGGACGGATCGCAAAGGCAACAAGATCAAGGGCAA
GGCAATGGCGGCCAACGAGGCAGCTGTTCGTGCTGACTTGCGTCGTCAGGGCGTCGTGCCCAGCCGTATCAAGAAACAGA
GCAAAGGCCTGTTCAGTGGCTCGGCCAAGATTACGATGGGCGACATTGCCATTTTCAGCCGGCAGCTCGCCACCATGCTC
AGCGCGGGCATTCCGCTGGTACAGGCGTTCGAGATCGTTGGCAGCGGGCACGAAAACGCGGCGATGCAAAAACTGATCAT
GACGATCAAGGCGGACGTCGAAGGCGGCAGCGCACTTGCCGAAGCCCTTGCCAAACACCCGCTTTATTTCGACGACCTGT
TCATCAATCTGGTTGAAGCCGGCGAGCAAGCAGGTGCTCTTGAAACCCTGCTGGACAAAATCGCGACCTACAAAGAAAAA
ACGGAAGCGATTAAGAAAAAGATCAAAAAAGCACTGACCTACCCGGCTGCCGTACTGGTTGTCGCATTCGTGGTAACCGT
CATTCTGCTGATTTTCGTGATCCCGGCATTCGAAGACTTGTTCCAGGGCTTTGGCGCCGATCTGCCGGCCTTTACACAAG
TCGTAATCGACCTTTCCAAATTTGTCCGCGATCAGGGCTGGATGCTGGCACTCGCCGGATTTGCCGCAGTATCCGCATTC
TTGTACTTCAAGAAGCGATCCCGGGCGATGCGGGAATTCCTTGACCGTATGGCACTGAAGACGCCGATCATTGGCCCGAT
CATTCAGAAAGCAGCCATTGCCCGTTACGCCCGGACGTTGTCAACAATGTTCAGCGCCGGTGTACCGCTGGTGGAAGCGC
TTGAGTCTGTAGCCGGCGCCACAGGTAACATCGTCTATGAAGTGGGCGTGCTGCACATGAAAGACGAGGTCTCCACTGGC
CAACGGCTGCAGCAGGCAATGGAAAACACGGACCTGTTCCCGAACATGGTTATCCAGATGATCGCCGTTGGTGAAGAATC
CGGCTCGCTTGATGAAATGTCCGCCAAAGTCGCCGACTTCTACGAGGAAGATGTGGACAACGCGGTCGACAATCTCAGCA
GCCTGCTCGAACCCATGATCATGGCAATCCTCGGTGTACTCGTCGGTGGACTGGTCATCGCCATGTACCTGCCAATTTTC
AAGATGGGCGCGGTCGTATAA
ATGGCGGAATCAGCGGTTGCTAACAGTACGCCTTTCCTTTGGGAAGGGACGGATCGCAAAGGCAACAAGATCAAGGGCAA
GGCAATGGCGGCCAACGAGGCAGCTGTTCGTGCTGACTTGCGTCGTCAGGGCGTCGTGCCCAGCCGTATCAAGAAACAGA
GCAAAGGCCTGTTCAGTGGCTCGGCCAAGATTACGATGGGCGACATTGCCATTTTCAGCCGGCAGCTCGCCACCATGCTC
AGCGCGGGCATTCCGCTGGTACAGGCGTTCGAGATCGTTGGCAGCGGGCACGAAAACGCGGCGATGCAAAAACTGATCAT
GACGATCAAGGCGGACGTCGAAGGCGGCAGCGCACTTGCCGAAGCCCTTGCCAAACACCCGCTTTATTTCGACGACCTGT
TCATCAATCTGGTTGAAGCCGGCGAGCAAGCAGGTGCTCTTGAAACCCTGCTGGACAAAATCGCGACCTACAAAGAAAAA
ACGGAAGCGATTAAGAAAAAGATCAAAAAAGCACTGACCTACCCGGCTGCCGTACTGGTTGTCGCATTCGTGGTAACCGT
CATTCTGCTGATTTTCGTGATCCCGGCATTCGAAGACTTGTTCCAGGGCTTTGGCGCCGATCTGCCGGCCTTTACACAAG
TCGTAATCGACCTTTCCAAATTTGTCCGCGATCAGGGCTGGATGCTGGCACTCGCCGGATTTGCCGCAGTATCCGCATTC
TTGTACTTCAAGAAGCGATCCCGGGCGATGCGGGAATTCCTTGACCGTATGGCACTGAAGACGCCGATCATTGGCCCGAT
CATTCAGAAAGCAGCCATTGCCCGTTACGCCCGGACGTTGTCAACAATGTTCAGCGCCGGTGTACCGCTGGTGGAAGCGC
TTGAGTCTGTAGCCGGCGCCACAGGTAACATCGTCTATGAAGTGGGCGTGCTGCACATGAAAGACGAGGTCTCCACTGGC
CAACGGCTGCAGCAGGCAATGGAAAACACGGACCTGTTCCCGAACATGGTTATCCAGATGATCGCCGTTGGTGAAGAATC
CGGCTCGCTTGATGAAATGTCCGCCAAAGTCGCCGACTTCTACGAGGAAGATGTGGACAACGCGGTCGACAATCTCAGCA
GCCTGCTCGAACCCATGATCATGGCAATCCTCGGTGTACTCGTCGGTGGACTGGTCATCGCCATGTACCTGCCAATTTTC
AAGATGGGCGCGGTCGTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
59.057 |
99.261 |
0.586 |
| pilC | Acinetobacter baumannii D1279779 |
57.935 |
97.783 |
0.567 |
| pilC | Pseudomonas stutzeri DSM 10701 |
56.02 |
100 |
0.562 |
| pilC | Acinetobacter baylyi ADP1 |
56.675 |
97.783 |
0.554 |
| pilG | Neisseria meningitidis 44/76-A |
47.619 |
98.276 |
0.468 |
| pilG | Neisseria gonorrhoeae MS11 |
47.368 |
98.276 |
0.466 |
| pilC | Vibrio campbellii strain DS40M4 |
42.105 |
98.276 |
0.414 |
| pilC | Vibrio cholerae strain A1552 |
42.172 |
97.537 |
0.411 |
| pilC | Thermus thermophilus HB27 |
37.845 |
98.276 |
0.372 |