Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   BA177_RS14090 Genome accession   NZ_CP016268
Coordinates   3116754..3117638 (+) Length   294 a.a.
NCBI ID   WP_068617245.1    Uniprot ID   -
Organism   Woeseia oceani strain XK5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3111754..3122638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA177_RS19190 (BA177_14070) - 3112337..3112798 (+) 462 Protein_2752 pilin -
  BA177_RS14075 (BA177_14075) - 3113013..3113516 (+) 504 WP_068617235.1 pilin -
  BA177_RS14080 (BA177_14080) pilB 3113688..3115409 (+) 1722 WP_068617238.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BA177_RS14085 (BA177_14085) pilC 3115444..3116664 (+) 1221 WP_068617240.1 type II secretion system F family protein Machinery gene
  BA177_RS14090 (BA177_14090) pilD 3116754..3117638 (+) 885 WP_068617245.1 A24 family peptidase Machinery gene
  BA177_RS14095 (BA177_14095) coaE 3117654..3118277 (+) 624 WP_068617251.1 dephospho-CoA kinase -
  BA177_RS14100 (BA177_14100) zapD 3118358..3119146 (+) 789 WP_197493069.1 cell division protein ZapD -
  BA177_RS14105 (BA177_14105) mutT 3119168..3119578 (-) 411 WP_082990125.1 8-oxo-dGTP diphosphatase MutT -
  BA177_RS14110 (BA177_14110) secA 3119588..3122506 (-) 2919 WP_197493071.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 32105.28 Da        Isoelectric Point: 7.6171

>NTDB_id=186429 BA177_RS14090 WP_068617245.1 3116754..3117638(+) (pilD) [Woeseia oceani strain XK5]
MIEILSAHPAVFLLVCVLFALLIGSFLNVVIYRVPVMMQREWRSQCQELLAEPADDLPEGRFDLVVPRSRCPSCGIQITA
LQNIPVVSYLLLRGKCGHCQARISARYPAIEVLTAVLTGLTAWRFGFGWEAAAAIGLTWVLIAITFIDFDHQIIPDSMSL
PLLWAGLSLSLFNPMPAAEVLFIAPKTAIVGALAGYLSLWSVYHLFKLVTGKEGMGYGDFKLLAALGAWLGWQELPVIII
LSALVGAIVGIALMAVRGRDRNVPMPFGPFLAAAGWLAMLYGPQIRSWWIGAVT

Nucleotide


Download         Length: 885 bp        

>NTDB_id=186429 BA177_RS14090 WP_068617245.1 3116754..3117638(+) (pilD) [Woeseia oceani strain XK5]
ATGATTGAAATTCTCTCTGCCCACCCTGCCGTCTTCCTGCTGGTCTGCGTACTCTTCGCGTTGCTGATCGGCAGCTTCCT
TAACGTCGTCATATACCGCGTGCCGGTCATGATGCAGCGCGAATGGCGTAGTCAGTGCCAGGAGTTGCTGGCCGAACCTG
CCGACGACTTGCCGGAAGGCCGGTTCGATCTGGTGGTGCCCCGTTCACGGTGTCCGTCCTGTGGTATCCAAATCACCGCG
CTGCAAAACATCCCTGTTGTCAGCTACCTCCTGTTGCGCGGCAAATGCGGGCACTGCCAGGCACGGATTTCGGCGCGCTA
TCCCGCCATTGAGGTGCTTACCGCGGTACTGACCGGTCTGACGGCGTGGCGCTTCGGCTTTGGCTGGGAAGCGGCCGCTG
CCATTGGCCTTACCTGGGTCCTGATCGCCATCACCTTTATCGATTTTGATCACCAGATCATTCCGGACTCCATGTCACTG
CCTCTGTTGTGGGCCGGCCTCAGCCTGAGCCTGTTCAACCCGATGCCCGCTGCCGAGGTGTTGTTCATCGCGCCGAAAAC
GGCCATTGTCGGCGCACTGGCGGGCTACCTCAGCCTGTGGAGTGTCTATCACCTGTTCAAGCTGGTGACCGGCAAAGAAG
GTATGGGGTACGGTGACTTCAAACTGCTTGCGGCACTTGGTGCATGGCTCGGCTGGCAAGAACTGCCGGTGATCATCATT
TTGTCAGCGCTGGTTGGAGCGATCGTCGGCATTGCCTTGATGGCAGTACGTGGCAGAGACCGGAATGTACCAATGCCTTT
CGGACCCTTTCTTGCGGCAGCCGGTTGGCTCGCCATGTTATACGGGCCACAAATTCGCAGCTGGTGGATCGGCGCTGTTA
CCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-125)

Type IV leader peptidase family (Peptidase_A24)

(137-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

51.02

100

0.51
  pilD Vibrio campbellii strain DS40M4

50.685

99.32

0.503
  pilD Acinetobacter baumannii D1279779

52

93.537

0.486
  pilD Acinetobacter nosocomialis M2

51.273

93.537

0.48
  pilD Neisseria gonorrhoeae MS11

48.913

93.878

0.459

Multiple sequence alignment