Detailed information NTG0186426

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: BA177_RS14065
• Genome accession: NZ_CP016268
• Coordinates: 3110769..3112085 (+)
• Length: 438 a.a.
• NCBI ID: WP_068617232.1
• Uniprot ID: A0A193LIF0
• Organism: Woeseia oceani strain XK5
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3105769..3117085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BA177_RS14045 (BA177_14045)	sucD	3106765..3107637 (-)	873	WP_068617220.1	succinate--CoA ligase subunit alpha	-
BA177_RS14050 (BA177_14050)	sucC	3107634..3108800 (-)	1167	WP_068617221.1	ADP-forming succinate--CoA ligase subunit beta	-
BA177_RS14060 (BA177_14060)	-	3109074..3110744 (+)	1671	WP_068617225.1	PAS domain-containing sensor histidine kinase	-
BA177_RS14065 (BA177_14065)	pilR	3110769..3112085 (+)	1317	WP_068617232.1	sigma-54 dependent transcriptional regulator	Regulator
BA177_RS19190 (BA177_14070)	-	3112337..3112798 (+)	462	Protein_2752	pilin	-
BA177_RS14075 (BA177_14075)	-	3113013..3113516 (+)	504	WP_068617235.1	pilin	-
BA177_RS14080 (BA177_14080)	pilB	3113688..3115409 (+)	1722	WP_068617238.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BA177_RS14085 (BA177_14085)	pilC	3115444..3116664 (+)	1221	WP_068617240.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 438 a.a.
• Molecular weight: 47735.56 Da
• Isoelectric Point: 5.1422

>NTDB_id=186426 BA177_RS14065 WP_068617232.1 3110769..3112085(+) (pilR) [Woeseia oceani strain XK5]
MNRPLALVIDDEPDIRELLALTLGRMNIEAALAGDVAEAQAQLSEHNFDLCLTDMRLPDGDGLDLVKWIQTNSPGVPVAV
ITAHGNVETAVQALKLGAFDFISKPLDLANLRNVIESALKLGEPAPADDNRLLGNSTPMRELRELIERVARSQAPVHICG
ESGTGKELVARLIHDSGPRADGPFVPVNCGAIPADLMESEFFGHRKGAFTGAVADKAGLVQSANGGTLFLDEIADLPLSM
QVKLLRVIQEQTVRPVGAAAEEQVNIRILSATHRNLADMVANSDFREDLFYRINVIELRVPPLRERGDDVLLLAENVMRR
LGSSTEMLDAGARKLLCSYRFPGNVRELENMLERAVTLCVNGSISSSDLHVRETPRADDALPAANSATSNLGGHIEDVER
QAIVEALEKTRYNKTAAAKRLGLSFRQLRYRIKKLGIE

Nucleotide

• Length: 1317 bp

>NTDB_id=186426 BA177_RS14065 WP_068617232.1 3110769..3112085(+) (pilR) [Woeseia oceani strain XK5]
ATGAACAGACCGTTGGCCCTGGTAATTGACGACGAGCCCGATATTCGCGAGCTGCTCGCGCTGACGCTCGGCCGTATGAA
TATTGAGGCAGCGCTCGCGGGCGACGTCGCTGAAGCGCAGGCGCAACTCAGCGAACACAATTTTGATCTTTGCCTGACAG
ACATGCGCTTGCCGGACGGGGATGGACTCGATCTCGTCAAGTGGATACAGACCAACAGTCCAGGCGTACCTGTCGCCGTC
ATCACCGCACACGGCAATGTGGAAACGGCGGTACAGGCGCTGAAGCTCGGTGCGTTCGACTTCATCTCGAAACCCCTCGA
TCTCGCCAATCTGCGCAATGTCATCGAAAGTGCGCTGAAACTGGGCGAGCCGGCGCCGGCAGACGACAATCGCCTGTTGG
GCAATTCCACACCCATGCGGGAACTGCGGGAGTTGATTGAGCGGGTCGCGCGCAGCCAGGCACCGGTCCACATCTGCGGC
GAGTCCGGTACCGGCAAGGAACTCGTGGCAAGACTGATCCATGACTCGGGGCCGCGTGCCGATGGACCTTTCGTGCCGGT
TAACTGCGGTGCAATTCCCGCGGACCTGATGGAGAGTGAGTTCTTTGGCCACCGCAAAGGCGCCTTCACAGGCGCGGTAG
CGGACAAAGCAGGACTGGTGCAAAGCGCGAATGGCGGTACGCTGTTTCTCGATGAAATCGCCGACCTGCCACTGTCCATG
CAGGTCAAGCTGCTGCGCGTAATACAGGAACAAACGGTCCGTCCAGTTGGCGCGGCGGCTGAGGAGCAGGTCAATATCCG
TATCCTGTCCGCGACTCACAGGAACCTCGCCGACATGGTGGCGAACAGCGACTTCCGCGAAGACCTGTTTTACCGAATCA
ATGTCATTGAACTGCGCGTCCCGCCGCTGCGTGAACGCGGCGACGATGTCCTGTTGCTTGCCGAAAACGTCATGCGGCGA
CTCGGCAGTTCAACGGAAATGCTGGATGCAGGCGCCCGCAAGCTGTTATGCAGCTACCGTTTTCCCGGCAACGTGCGCGA
ACTGGAAAACATGCTGGAGCGGGCAGTTACGCTGTGCGTCAATGGCAGCATTTCGAGTTCCGACCTGCACGTCCGGGAAA
CTCCTCGGGCGGACGATGCATTGCCAGCGGCCAACAGCGCGACGTCCAATCTCGGTGGGCATATCGAAGATGTTGAGCGC
CAGGCGATTGTCGAAGCACTCGAAAAAACCCGCTACAACAAGACGGCGGCGGCGAAGCGACTGGGGCTGTCGTTTCGCCA
GTTGCGGTATCGCATCAAGAAACTCGGTATCGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (132-298)

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (395-435)

3D structure

• AlphaFold DB: A0A193LIF0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.538	100	0.616
pilR	Acinetobacter baumannii strain A118	47.957	100	0.509
luxO	Vibrio cholerae strain A1552	37.246	100	0.377