Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LLJM4_RS05885 Genome accession   NZ_CP015909
Coordinates   1168570..1169220 (-) Length   216 a.a.
NCBI ID   WP_134047339.1    Uniprot ID   -
Organism   Lactococcus cremoris strain JM4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1163570..1174220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJM4_RS05855 (LLJM4_1111) - 1163761..1165293 (+) 1533 WP_081196670.1 Nramp family divalent metal transporter -
  LLJM4_RS05860 (LLJM4_1112) - 1165367..1166335 (+) 969 WP_021165232.1 PhoH family protein -
  LLJM4_RS05865 (LLJM4_1113) - 1166405..1166899 (+) 495 WP_011676092.1 NUDIX hydrolase -
  LLJM4_RS05870 (LLJM4_1114) ybeY 1166990..1167478 (+) 489 WP_011835335.1 rRNA maturation RNase YbeY -
  LLJM4_RS05875 (LLJM4_1115) - 1167462..1167917 (+) 456 WP_011676094.1 diacylglycerol kinase family protein -
  LLJM4_RS05880 (LLJM4_1116) - 1167934..1168512 (+) 579 WP_011676095.1 nucleotidyltransferase family protein -
  LLJM4_RS05885 (LLJM4_1117) comFC 1168570..1169220 (-) 651 WP_134047339.1 ComF family protein Machinery gene
  LLJM4_RS13845 - 1169220..1170514 (-) 1295 Protein_1155 helicase-related protein -
  LLJM4_RS05900 (LLJM4_1119) - 1170571..1171206 (+) 636 WP_011676097.1 YigZ family protein -
  LLJM4_RS05905 (LLJM4_1305) - 1171301..1172191 (-) 891 WP_205288510.1 IS982-like element ISLll1 family transposase -
  LLJM4_RS05910 (LLJM4_1122) - 1172295..1172756 (+) 462 WP_260357325.1 VanZ family protein -
  LLJM4_RS05915 (LLJM4_1123) - 1172822..1173841 (+) 1020 WP_032951092.1 DUF475 domain-containing protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25225.51 Da        Isoelectric Point: 9.8465

>NTDB_id=183414 LLJM4_RS05885 WP_134047339.1 1168570..1169220(-) (comFC) [Lactococcus cremoris strain JM4]
MQTCLLCSRIIKQTLTFSEFFLLKKNRNLICNKCQSLFKKIPNERCPRCSKSNSKGICADCLKWEEKGIIVNHQSIFIYN
QAMKDYFSLYKFMGDYRLHEVFDSYFKNLSKKIPLVPIPVSPKRLQERGFNQVTAFLKDRAYLDLLEKEDTVRQSSLNHE
GRLSTSNPFKLKEGEKIPQKIILIDDIYTTGTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide


Download         Length: 651 bp        

>NTDB_id=183414 LLJM4_RS05885 WP_134047339.1 1168570..1169220(-) (comFC) [Lactococcus cremoris strain JM4]
ATGCAAACTTGTCTGCTTTGTTCCAGAATTATCAAACAAACACTCACTTTTAGTGAATTCTTTTTACTAAAAAAAAACAG
AAATTTAATATGCAATAAATGCCAATCACTGTTTAAAAAAATTCCTAACGAACGTTGTCCTCGTTGCTCTAAATCTAACT
CTAAAGGTATATGTGCTGACTGTCTCAAGTGGGAAGAAAAAGGAATCATTGTTAATCATCAGTCAATTTTTATTTATAAC
CAAGCAATGAAGGATTACTTTAGTCTTTACAAATTTATGGGAGATTATCGATTACACGAAGTCTTCGATTCCTATTTTAA
AAATTTGTCCAAAAAAATTCCTCTGGTTCCCATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGTTTTAACCAAGTAA
CAGCTTTTCTAAAAGATAGAGCTTATCTTGATTTGCTTGAAAAAGAGGATACTGTCAGACAATCAAGTCTTAATCACGAG
GGACGTCTATCAACTAGCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCCAAAAAATCATTTTGATTGATGATAT
TTATACAACTGGAACTACTTTTTATCATGCAATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTTTCAC
TCTGCCGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

97.761

62.037

0.606
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

100

0.491
  comFC/cflB Streptococcus pneumoniae Rx1

46.33

100

0.468
  comFC/cflB Streptococcus pneumoniae D39

46.33

100

0.468
  comFC/cflB Streptococcus pneumoniae R6

46.33

100

0.468
  comFC/cflB Streptococcus pneumoniae TIGR4

46.33

100

0.468
  comFC/cflB Streptococcus mitis SK321

46.33

100

0.468
  comFC Bacillus subtilis subsp. subtilis str. 168

34.802

100

0.366

Multiple sequence alignment