Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LLJM1_RS06050 Genome accession   NZ_CP015899
Coordinates   1100761..1101219 (-) Length   152 a.a.
NCBI ID   WP_081196108.1    Uniprot ID   A0A1V0PH51
Organism   Lactococcus cremoris strain JM1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1095761..1106219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJM1_RS06020 (LLJM1_1149) - 1096908..1097876 (+) 969 WP_021165232.1 PhoH family protein -
  LLJM1_RS06025 (LLJM1_1150) - 1097946..1098440 (+) 495 WP_011676092.1 NUDIX hydrolase -
  LLJM1_RS06030 (LLJM1_1151) ybeY 1098531..1099019 (+) 489 WP_032951096.1 rRNA maturation RNase YbeY -
  LLJM1_RS06035 (LLJM1_1152) - 1099003..1099458 (+) 456 WP_011676094.1 diacylglycerol kinase family protein -
  LLJM1_RS06040 (LLJM1_1153) - 1099475..1100053 (+) 579 WP_011676095.1 nucleotidyltransferase family protein -
  LLJM1_RS06045 (LLJM1_1154) comFC 1100111..1100761 (-) 651 WP_032951095.1 ComF family protein Machinery gene
  LLJM1_RS06050 (LLJM1_1155) comFA 1100761..1101219 (-) 459 WP_081196108.1 helicase-related protein Machinery gene
  LLJM1_RS06055 (LLJM1_1156) - 1101313..1102248 (+) 936 WP_031559015.1 IS30 family transposase -
  LLJM1_RS06060 (LLJM1_1157) comFA 1102346..1103131 (-) 786 WP_021214114.1 DEAD/DEAH box helicase family protein Machinery gene
  LLJM1_RS06065 (LLJM1_1158) - 1103188..1103823 (+) 636 WP_011676097.1 YigZ family protein -
  LLJM1_RS06070 (LLJM1_1159) - 1103865..1104323 (+) 459 WP_063280772.1 VanZ family protein -
  LLJM1_RS06075 (LLJM1_1160) - 1104372..1105319 (+) 948 WP_003130410.1 IS30 family transposase -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17319.40 Da        Isoelectric Point: 10.8857

>NTDB_id=182933 LLJM1_RS06050 WP_081196108.1 1100761..1101219(-) (comFA) [Lactococcus cremoris strain JM1]
MCGFFWKKTFYKKFIEQRKTGFPLLIFVAEIDFGQDFAKNLQEKFPKEKMAFVASTTKSKKTIVEAFRKKQVSILITTSI
LERGVTFSSIDVFVINSEHPNFTKSALIQMAGRVGRDSKRPTGLVSFFHSGKSLAMCQAQKEIKKMNRLGGF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=182933 LLJM1_RS06050 WP_081196108.1 1100761..1101219(-) (comFA) [Lactococcus cremoris strain JM1]
ATTTGCGGTTTTTTTTGGAAAAAAACATTTTATAAAAAATTCATTGAGCAAAGAAAGACTGGTTTCCCACTTCTAATTTT
CGTTGCCGAAATCGACTTTGGTCAAGACTTTGCCAAAAATTTACAAGAAAAATTTCCAAAAGAAAAAATGGCTTTTGTCG
CTTCAACAACTAAAAGCAAAAAAACGATTGTCGAAGCTTTTCGCAAGAAACAAGTTTCGATTTTAATTACGACTTCTATT
CTTGAACGAGGCGTAACTTTTTCTTCGATTGATGTTTTTGTCATTAATAGCGAACACCCTAATTTCACAAAATCTGCCCT
CATTCAAATGGCCGGACGAGTGGGACGCGACTCTAAACGTCCAACAGGTTTAGTTAGTTTTTTTCACTCTGGAAAATCTT
TAGCCATGTGTCAAGCTCAGAAAGAAATTAAAAAAATGAACCGACTCGGAGGTTTTTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(12-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0PH51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

99.329

98.026

0.974
  comFA/cflA Streptococcus pneumoniae Rx1

52.817

93.421

0.493
  comFA/cflA Streptococcus pneumoniae D39

52.817

93.421

0.493
  comFA/cflA Streptococcus pneumoniae R6

52.817

93.421

0.493
  comFA/cflA Streptococcus pneumoniae TIGR4

52.817

93.421

0.493
  comFA/cflA Streptococcus mitis SK321

52.113

93.421

0.487
  comFA/cflA Streptococcus mitis NCTC 12261

52.113

93.421

0.487
  comFA Bacillus subtilis subsp. subtilis str. 168

38.365

100

0.401

Multiple sequence alignment