Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | A7X73_RS07880 | Genome accession | NZ_CP015642 |
| Coordinates | 1652946..1653392 (-) | Length | 148 a.a. |
| NCBI ID | WP_106421052.1 | Uniprot ID | - |
| Organism | Staphylococcus simulans strain MR1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1622035..1661492 | 1652946..1653392 | within | 0 |
Gene organization within MGE regions
Location: 1622035..1661492
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7X73_RS07665 (A7X73_07605) | - | 1622035..1622457 (-) | 423 | WP_106421026.1 | hypothetical protein | - |
| A7X73_RS07670 (A7X73_07610) | - | 1622457..1623014 (-) | 558 | WP_106421027.1 | ImmA/IrrE family metallo-endopeptidase | - |
| A7X73_RS07675 (A7X73_07615) | - | 1623431..1623616 (-) | 186 | WP_182475589.1 | hypothetical protein | - |
| A7X73_RS07680 | - | 1623618..1623728 (-) | 111 | WP_105976116.1 | hypothetical protein | - |
| A7X73_RS07685 | - | 1623802..1623953 (-) | 152 | Protein_1489 | hypothetical protein | - |
| A7X73_RS07690 (A7X73_07620) | - | 1624324..1624866 (-) | 543 | WP_105976114.1 | hypothetical protein | - |
| A7X73_RS07695 (A7X73_07625) | - | 1625576..1627048 (-) | 1473 | WP_105976113.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| A7X73_RS07700 (A7X73_07630) | - | 1627049..1627297 (-) | 249 | WP_105976112.1 | phage holin | - |
| A7X73_RS07705 (A7X73_07635) | - | 1627437..1627736 (-) | 300 | WP_106421028.1 | DUF2951 family protein | - |
| A7X73_RS07710 (A7X73_07640) | - | 1627793..1628071 (-) | 279 | WP_105976111.1 | hypothetical protein | - |
| A7X73_RS07715 (A7X73_07645) | - | 1628077..1629945 (-) | 1869 | WP_105976110.1 | phage tail spike protein | - |
| A7X73_RS07720 (A7X73_07650) | - | 1629962..1631614 (-) | 1653 | WP_106421029.1 | hypothetical protein | - |
| A7X73_RS07725 (A7X73_07655) | - | 1631625..1632554 (-) | 930 | WP_106421030.1 | phage tail domain-containing protein | - |
| A7X73_RS07730 (A7X73_07660) | - | 1632558..1636331 (-) | 3774 | WP_106421031.1 | phage tail protein | - |
| A7X73_RS07735 (A7X73_07665) | - | 1636354..1636668 (-) | 315 | WP_106421032.1 | hypothetical protein | - |
| A7X73_RS07740 (A7X73_07670) | - | 1636701..1637159 (-) | 459 | WP_106421033.1 | tail assembly chaperone | - |
| A7X73_RS07745 (A7X73_07675) | - | 1637227..1637784 (-) | 558 | WP_106421034.1 | phage tail protein | - |
| A7X73_RS07750 (A7X73_07680) | - | 1637798..1638268 (-) | 471 | WP_106421035.1 | hypothetical protein | - |
| A7X73_RS07755 (A7X73_07685) | - | 1638283..1638666 (-) | 384 | WP_106421036.1 | HK97 gp10 family phage protein | - |
| A7X73_RS07760 (A7X73_07690) | - | 1638670..1638993 (-) | 324 | WP_106421037.1 | head-tail adaptor protein | - |
| A7X73_RS07765 (A7X73_07695) | - | 1638983..1639303 (-) | 321 | WP_105976100.1 | phage head-tail connector protein | - |
| A7X73_RS13875 | - | 1639315..1639482 (-) | 168 | WP_182671258.1 | hypothetical protein | - |
| A7X73_RS07770 (A7X73_07700) | - | 1639500..1640459 (-) | 960 | WP_105976099.1 | phage capsid protein | - |
| A7X73_RS07775 (A7X73_07705) | - | 1640474..1641043 (-) | 570 | WP_105976098.1 | phage scaffolding protein | - |
| A7X73_RS07780 (A7X73_07710) | - | 1641147..1642124 (-) | 978 | WP_158257427.1 | phage minor head protein | - |
| A7X73_RS07785 (A7X73_07715) | - | 1642102..1643454 (-) | 1353 | WP_142397735.1 | phage portal protein | - |
| A7X73_RS07790 (A7X73_07720) | - | 1643499..1644770 (-) | 1272 | WP_106421040.1 | PBSX family phage terminase large subunit | - |
| A7X73_RS07795 (A7X73_07725) | - | 1644770..1645147 (-) | 378 | WP_002480794.1 | hypothetical protein | - |
| A7X73_RS07800 (A7X73_07730) | - | 1645226..1645771 (-) | 546 | WP_106421041.1 | YfbU family protein | - |
| A7X73_RS07805 (A7X73_07735) | - | 1645968..1646393 (-) | 426 | WP_070548334.1 | transcriptional regulator | - |
| A7X73_RS07810 (A7X73_07740) | rinB | 1646520..1646696 (-) | 177 | WP_106421042.1 | transcriptional activator RinB | - |
| A7X73_RS07815 (A7X73_07745) | - | 1646699..1646995 (-) | 297 | WP_106421043.1 | hypothetical protein | - |
| A7X73_RS07820 (A7X73_07750) | - | 1647035..1647543 (-) | 509 | Protein_1517 | dUTPase | - |
| A7X73_RS07825 (A7X73_07755) | - | 1647540..1647752 (-) | 213 | WP_202617285.1 | hypothetical protein | - |
| A7X73_RS07830 (A7X73_07760) | - | 1647764..1648024 (-) | 261 | WP_106421045.1 | hypothetical protein | - |
| A7X73_RS14115 | - | 1648026..1648157 (-) | 132 | WP_257790908.1 | hypothetical protein | - |
| A7X73_RS13780 | - | 1648305..1648481 (-) | 177 | WP_158263702.1 | hypothetical protein | - |
| A7X73_RS07835 (A7X73_07765) | - | 1648482..1648901 (-) | 420 | WP_105976084.1 | DUF3310 domain-containing protein | - |
| A7X73_RS07840 (A7X73_07770) | - | 1648902..1649417 (-) | 516 | WP_106421046.1 | hypothetical protein | - |
| A7X73_RS07845 (A7X73_07775) | - | 1649430..1649621 (-) | 192 | WP_105980080.1 | hypothetical protein | - |
| A7X73_RS07850 (A7X73_07780) | - | 1649622..1650029 (-) | 408 | WP_106421047.1 | RusA family crossover junction endodeoxyribonuclease | - |
| A7X73_RS07860 (A7X73_07790) | - | 1650195..1650968 (-) | 774 | WP_060804512.1 | ATP-binding protein | - |
| A7X73_RS07865 (A7X73_07795) | - | 1650981..1651718 (-) | 738 | WP_106421049.1 | conserved phage C-terminal domain-containing protein | - |
| A7X73_RS07870 (A7X73_07800) | - | 1651764..1652246 (+) | 483 | WP_106421050.1 | hypothetical protein | - |
| A7X73_RS07875 (A7X73_07805) | - | 1652262..1652933 (-) | 672 | WP_106421051.1 | putative HNHc nuclease | - |
| A7X73_RS07880 (A7X73_07810) | ssbA | 1652946..1653392 (-) | 447 | WP_106421052.1 | single-stranded DNA-binding protein | Machinery gene |
| A7X73_RS07885 (A7X73_07815) | - | 1653392..1654063 (-) | 672 | WP_106421053.1 | ERF family protein | - |
| A7X73_RS07890 (A7X73_07820) | - | 1654026..1654280 (-) | 255 | WP_106421054.1 | DUF2483 family protein | - |
| A7X73_RS07895 (A7X73_07825) | - | 1654273..1654497 (-) | 225 | WP_106421055.1 | hypothetical protein | - |
| A7X73_RS07900 (A7X73_07830) | - | 1654597..1654812 (-) | 216 | WP_106421056.1 | hypothetical protein | - |
| A7X73_RS07905 (A7X73_07835) | - | 1654825..1655127 (-) | 303 | WP_002480770.1 | DUF771 domain-containing protein | - |
| A7X73_RS07910 (A7X73_07840) | - | 1655242..1655565 (+) | 324 | WP_106421057.1 | hypothetical protein | - |
| A7X73_RS13785 | - | 1655554..1655712 (-) | 159 | WP_159079669.1 | hypothetical protein | - |
| A7X73_RS07915 (A7X73_07845) | - | 1655759..1655986 (-) | 228 | WP_106421058.1 | hypothetical protein | - |
| A7X73_RS07920 (A7X73_07850) | - | 1655987..1656760 (-) | 774 | WP_106421059.1 | phage antirepressor | - |
| A7X73_RS07925 (A7X73_07855) | - | 1656876..1657112 (+) | 237 | WP_105976070.1 | hypothetical protein | - |
| A7X73_RS13880 | - | 1657105..1657266 (-) | 162 | WP_182477690.1 | hypothetical protein | - |
| A7X73_RS07930 (A7X73_07860) | - | 1657281..1657520 (-) | 240 | WP_106421060.1 | helix-turn-helix domain-containing protein | - |
| A7X73_RS07935 (A7X73_07865) | - | 1657713..1658045 (+) | 333 | WP_105996454.1 | helix-turn-helix domain-containing protein | - |
| A7X73_RS07940 (A7X73_07870) | - | 1658059..1658532 (+) | 474 | WP_106421061.1 | ImmA/IrrE family metallo-endopeptidase | - |
| A7X73_RS07945 (A7X73_07875) | - | 1658537..1659160 (+) | 624 | WP_234016058.1 | DUF4352 domain-containing protein | - |
| A7X73_RS13790 | - | 1659339..1659479 (+) | 141 | WP_158257428.1 | hypothetical protein | - |
| A7X73_RS07950 (A7X73_07880) | - | 1659574..1660089 (+) | 516 | WP_106421062.1 | hypothetical protein | - |
| A7X73_RS07955 (A7X73_07885) | - | 1660091..1660399 (+) | 309 | WP_106421063.1 | hypothetical protein | - |
| A7X73_RS07960 (A7X73_07890) | - | 1660464..1661492 (+) | 1029 | WP_106421064.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16698.38 Da Isoelectric Point: 4.9225
>NTDB_id=181685 A7X73_RS07880 WP_106421052.1 1652946..1653392(-) (ssbA) [Staphylococcus simulans strain MR1]
MLNRVVLVGRLTKDPEFRTTQSGVDVATFTLAVNRNFKSKNGEQQADFINCVVFRKQAENVNNYLNKGSLAGIDGRLQSR
SYENAEGQRVFVTEVVCDSVQFLEPKNAQASNNNQSNNQVQQREKALQSENPFNNSNNFDMDTDDLPF
MLNRVVLVGRLTKDPEFRTTQSGVDVATFTLAVNRNFKSKNGEQQADFINCVVFRKQAENVNNYLNKGSLAGIDGRLQSR
SYENAEGQRVFVTEVVCDSVQFLEPKNAQASNNNQSNNQVQQREKALQSENPFNNSNNFDMDTDDLPF
Nucleotide
Download Length: 447 bp
>NTDB_id=181685 A7X73_RS07880 WP_106421052.1 1652946..1653392(-) (ssbA) [Staphylococcus simulans strain MR1]
ATGTTAAACAGAGTCGTATTAGTAGGTCGCTTAACAAAAGACCCGGAATTCAGAACAACGCAAAGCGGTGTAGATGTAGC
AACATTCACACTAGCAGTCAACCGTAATTTTAAGAGTAAAAACGGAGAGCAGCAGGCGGACTTTATCAACTGTGTTGTAT
TCCGTAAACAAGCAGAAAACGTCAATAATTATTTGAATAAAGGAAGTTTAGCAGGTATCGATGGTCGCTTACAATCACGA
AGTTATGAGAATGCGGAAGGACAAAGAGTATTTGTTACGGAAGTCGTATGTGACAGTGTGCAATTCCTAGAACCTAAGAA
TGCACAAGCCTCAAACAATAACCAATCAAATAACCAAGTGCAGCAAAGAGAGAAGGCGCTTCAAAGCGAAAATCCATTCA
ATAATAGCAACAACTTTGATATGGATACGGATGATTTACCTTTCTAG
ATGTTAAACAGAGTCGTATTAGTAGGTCGCTTAACAAAAGACCCGGAATTCAGAACAACGCAAAGCGGTGTAGATGTAGC
AACATTCACACTAGCAGTCAACCGTAATTTTAAGAGTAAAAACGGAGAGCAGCAGGCGGACTTTATCAACTGTGTTGTAT
TCCGTAAACAAGCAGAAAACGTCAATAATTATTTGAATAAAGGAAGTTTAGCAGGTATCGATGGTCGCTTACAATCACGA
AGTTATGAGAATGCGGAAGGACAAAGAGTATTTGTTACGGAAGTCGTATGTGACAGTGTGCAATTCCTAGAACCTAAGAA
TGCACAAGCCTCAAACAATAACCAATCAAATAACCAAGTGCAGCAAAGAGAGAAGGCGCTTCAAAGCGAAAATCCATTCA
ATAATAGCAACAACTTTGATATGGATACGGATGATTTACCTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.655 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.574 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
71.622 |
0.419 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
38.514 |
100 |
0.385 |
| ssb | Glaesserella parasuis strain SC1401 |
30.601 |
100 |
0.378 |
| ssbA | Streptococcus mutans UA159 |
45.833 |
81.081 |
0.372 |