Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GFC29_RS13305 Genome accession   NZ_CP015436
Coordinates   2776850..2777344 (-) Length   164 a.a.
NCBI ID   WP_044745160.1    Uniprot ID   A0A160F8E7
Organism   Anoxybacillus sp. B7M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2771850..2782344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFC29_RS13285 (GFC29_2721) rplI 2773030..2773479 (-) 450 WP_044745163.1 50S ribosomal protein L9 -
  GFC29_RS13290 (GFC29_2722) - 2773476..2775449 (-) 1974 WP_044745162.1 DHH family phosphoesterase -
  GFC29_RS13295 (GFC29_2723) - 2775488..2776417 (-) 930 WP_044745161.1 YybS family protein -
  GFC29_RS13300 (GFC29_2724) rpsR 2776486..2776722 (-) 237 WP_027408127.1 30S ribosomal protein S18 -
  GFC29_RS13305 (GFC29_2725) ssbA 2776850..2777344 (-) 495 WP_044745160.1 single-stranded DNA-binding protein Machinery gene
  GFC29_RS13310 (GFC29_2726) rpsF 2777372..2777659 (-) 288 WP_044745159.1 30S ribosomal protein S6 -
  GFC29_RS13315 (GFC29_2727) ychF 2777765..2778865 (-) 1101 WP_044745158.1 redox-regulated ATPase YchF -
  GFC29_RS13320 (GFC29_2728) - 2778936..2780945 (-) 2010 WP_044745157.1 molybdopterin-dependent oxidoreductase -
  GFC29_RS13325 (GFC29_2729) - 2780984..2781178 (-) 195 WP_044745156.1 DUF951 domain-containing protein -
  GFC29_RS13330 (GFC29_2730) - 2781193..2782083 (-) 891 WP_044745155.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18252.17 Da        Isoelectric Point: 4.8215

>NTDB_id=179737 GFC29_RS13305 WP_044745160.1 2776850..2777344(-) (ssbA) [Anoxybacillus sp. B7M1]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRLQTR
SYEGQDGKRVYVTEVVADSVQFLEPKGSTEQRGAATGGYYGEPYPFGQNQNPRHTTDPGYSRIDEDPFAHDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=179737 GFC29_RS13305 WP_044745160.1 2776850..2777344(-) (ssbA) [Anoxybacillus sp. B7M1]
ATGATTAACCGCGTAATTCTTGTAGGGAGACTTACAAGAGATCCAGAATTGCGCTATACTCCAAGTGGAGTAGCTGTTGC
CACGTTTACATTAGCTGTTAATCGCCCGTTTACAAACCAGCAAGGCGAACGTGAAGCAGATTTTATCAATTGCGTCGTCT
GGCGTCGTCCAGCAGAGAATGTGGCGAACTTCTTAAAAAAGGGAAGCTTGGCTGGCGTGGATGGCCGTTTGCAAACGAGA
AGTTACGAAGGGCAAGATGGAAAGCGTGTGTACGTAACCGAGGTGGTTGCTGATAGTGTTCAATTTCTTGAGCCTAAAGG
TAGTACGGAACAGCGTGGTGCAGCAACAGGCGGCTATTATGGAGAGCCTTATCCATTTGGACAAAATCAGAACCCGCGTC
ACACAACCGACCCAGGCTATAGTCGCATCGATGAGGATCCGTTTGCCCATGATGGACAGCCTATTGATATATCCGATGAC
GACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160F8E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.241

100

0.713
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.628
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

64.634

0.409
  ssb Neisseria meningitidis MC58

35.028

100

0.378
  ssb Neisseria gonorrhoeae MS11

35.028

100

0.378
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.366

Multiple sequence alignment