Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   V471_RS05520 Genome accession   NZ_CP015283
Coordinates   1073509..1075002 (+) Length   497 a.a.
NCBI ID   WP_014632819.1    Uniprot ID   A0A1W5ZDT1
Organism   Streptococcus salivarius strain ATCC 25975     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068509..1080002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS05505 (V471_05425) - 1068875..1069771 (+) 897 WP_084871191.1 RluA family pseudouridine synthase -
  V471_RS05510 (V471_05430) pta 1069785..1070768 (+) 984 WP_084871192.1 phosphate acetyltransferase -
  V471_RS05515 (V471_05435) amiA 1071005..1072975 (+) 1971 WP_014632817.1 peptide ABC transporter substrate-binding protein Regulator
  V471_RS05520 (V471_05440) amiC 1073509..1075002 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  V471_RS05525 (V471_05445) amiD 1075002..1075928 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  V471_RS05530 (V471_05450) amiE 1075938..1077023 (+) 1086 WP_037601740.1 ABC transporter ATP-binding protein Regulator
  V471_RS05535 (V471_05455) amiF 1077016..1077945 (+) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator
  V471_RS05540 (V471_05460) - 1077995..1078780 (-) 786 WP_041826692.1 hypothetical protein -
  V471_RS05545 (V471_05465) - 1078792..1079490 (-) 699 WP_084871193.1 ABC transporter ATP-binding protein -
  V471_RS05550 (V471_05470) - 1079495..1079872 (-) 378 WP_002884206.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55883.67 Da        Isoelectric Point: 10.0050

>NTDB_id=178307 V471_RS05520 WP_014632819.1 1073509..1075002(+) (amiC) [Streptococcus salivarius strain ATCC 25975]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGHGWRLHQFKESKQFYATRDVPVLERVFGFYKHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAFPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=178307 V471_RS05520 WP_014632819.1 1073509..1075002(+) (amiC) [Streptococcus salivarius strain ATCC 25975]
ATGAAAAAATACATTTTATTGAGAACCCTTCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACCATTAT
TTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCAAAGACAGCCGATTCGAAGG
CAAACTATGAAAATACAATCTATGAGCGAATGGGTTATATTGATTACTATGACACCAAGGAGTTGCAGGAAAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAAGCTATTTACCAAAAATATGTGGATAGTTTAGGACA
TGGCTGGCGTTTGCATCAATTCAAGGAAAGTAAGCAATTCTATGCGACACGTGATGTGCCTGTACTTGAACGTGTGTTTG
GCTTCTATAAGCACCTCTTTGAATTTGACAATACGGGATGGGTGAAAGATAAAACAAATCCAAACTTGAAACGATACATT
CGAATTGAAAATGATCCAGCTATTGGTTGGTCAGTGGTTGGTTCAGGGACTAAGCATAAATATCTGCTTTACTTTAACGG
TCAGTTCCCATTTGTTCACCAAAACTTCGTGAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACGCAAGGTCAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAGATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCGAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCTACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACGCTCTTTGATAGTGTATCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGAATCCCAGCATCTATCGTTAG
TGTTATTACAGGGGCAACTTTGACAGAAACAATCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCTCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATAATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W5ZDT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.39

100

0.984
  amiC Streptococcus thermophilus LMG 18311

97.384

100

0.974
  amiC Streptococcus thermophilus LMD-9

97.384

100

0.974

Multiple sequence alignment