Detailed information NTG0178308

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: V471_RS05525
• Genome accession: NZ_CP015283
• Coordinates: 1075002..1075928 (+)
• Length: 308 a.a.
• NCBI ID: WP_002886846.1
• Uniprot ID: A0A0F3HAC7
• Organism: Streptococcus salivarius strain ATCC 25975
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1070002..1080928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V471_RS05515 (V471_05435)	amiA	1071005..1072975 (+)	1971	WP_014632817.1	peptide ABC transporter substrate-binding protein	Regulator
V471_RS05520 (V471_05440)	amiC	1073509..1075002 (+)	1494	WP_014632819.1	ABC transporter permease	Regulator
V471_RS05525 (V471_05445)	amiD	1075002..1075928 (+)	927	WP_002886846.1	oligopeptide ABC transporter permease OppC	Regulator
V471_RS05530 (V471_05450)	amiE	1075938..1077023 (+)	1086	WP_037601740.1	ABC transporter ATP-binding protein	Regulator
V471_RS05535 (V471_05455)	amiF	1077016..1077945 (+)	930	WP_014634820.1	ATP-binding cassette domain-containing protein	Regulator
V471_RS05540 (V471_05460)	-	1077995..1078780 (-)	786	WP_041826692.1	hypothetical protein	-
V471_RS05545 (V471_05465)	-	1078792..1079490 (-)	699	WP_084871193.1	ABC transporter ATP-binding protein	-
V471_RS05550 (V471_05470)	-	1079495..1079872 (-)	378	WP_002884206.1	GntR family transcriptional regulator	-
V471_RS05555 (V471_05475)	-	1080054..1080848 (+)	795	WP_084871194.1	HAD-IIB family hydrolase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34607.77 Da
• Isoelectric Point: 9.7054

>NTDB_id=178308 V471_RS05525 WP_002886846.1 1075002..1075928(+) (amiD) [Streptococcus salivarius strain ATCC 25975]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTVVMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVVIGLLVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTAKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=178308 V471_RS05525 WP_002886846.1 1075002..1075928(+) (amiD) [Streptococcus salivarius strain ATCC 25975]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCAGCTTA
TTCTTACTGGAAATCAGTGATGCGTCAATTCTTTAAAAAGAAATCAACAGTAGTAATGTTGGGGATCTTGATTGCCATCG
TTTTGATGAGTTTCATCTATCCAATGTTCTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAATGCTCAATACTGGTTCGGTACTGACAGTAATGGTAAGTCCCTCTTTGATAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGTTATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTTTGGAATATGATCTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCCTATAC
CATTCGTATTCAAATCATGCGTTATCGTGATTTGGAGTACAACTTGGCTTCTCGTACACTGGGAACGCCAACTGCTAAGA
TTGTGGTTAAAAACATCATGCCGCAACTTGTGTCAGTTATCGTGACTATGGCTAGTCAGCTTTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCATACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTTGCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGCGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

3D structure

• AlphaFold DB: A0A0F3HAC7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus salivarius strain HSISS4	98.377	100	0.984
amiD	Streptococcus thermophilus LMG 18311	97.403	100	0.974
amiD	Streptococcus thermophilus LMD-9	97.403	100	0.974