Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   V471_RS05535 Genome accession   NZ_CP015283
Coordinates   1077016..1077945 (+) Length   309 a.a.
NCBI ID   WP_014634820.1    Uniprot ID   A0AAP3Q635
Organism   Streptococcus salivarius strain ATCC 25975     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1072016..1082945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS05520 (V471_05440) amiC 1073509..1075002 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  V471_RS05525 (V471_05445) amiD 1075002..1075928 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  V471_RS05530 (V471_05450) amiE 1075938..1077023 (+) 1086 WP_037601740.1 ABC transporter ATP-binding protein Regulator
  V471_RS05535 (V471_05455) amiF 1077016..1077945 (+) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator
  V471_RS05540 (V471_05460) - 1077995..1078780 (-) 786 WP_041826692.1 hypothetical protein -
  V471_RS05545 (V471_05465) - 1078792..1079490 (-) 699 WP_084871193.1 ABC transporter ATP-binding protein -
  V471_RS05550 (V471_05470) - 1079495..1079872 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  V471_RS05555 (V471_05475) - 1080054..1080848 (+) 795 WP_084871194.1 HAD-IIB family hydrolase -
  V471_RS05560 (V471_05480) - 1080841..1081659 (+) 819 WP_070579768.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35020.08 Da        Isoelectric Point: 6.5822

>NTDB_id=178310 V471_RS05535 WP_014634820.1 1077016..1077945(+) (amiF) [Streptococcus salivarius strain ATCC 25975]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQILNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=178310 V471_RS05535 WP_014634820.1 1077016..1077945(+) (amiF) [Streptococcus salivarius strain ATCC 25975]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACTACTATCGGTCGTG
CCATTATTGGTCTGAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGGCACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGT
ATTGCGCGTTCCTTGGTTATGCAACCTGACTTGGTCATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAATTTTGAACCTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCGATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCTGTTGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAAGCCGAAATTGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.353

100

0.994
  amiF Streptococcus thermophilus LMG 18311

98.058

100

0.981
  amiF Streptococcus thermophilus LMD-9

97.735

100

0.977

Multiple sequence alignment