Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V471_RS05515 Genome accession   NZ_CP015283
Coordinates   1071005..1072975 (+) Length   656 a.a.
NCBI ID   WP_014632817.1    Uniprot ID   A0A0F3HDR2
Organism   Streptococcus salivarius strain ATCC 25975     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1066005..1077975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS05490 (V471_05410) - 1066725..1067300 (-) 576 WP_037604672.1 CYTH domain-containing protein -
  V471_RS05495 (V471_05415) - 1067396..1068070 (+) 675 WP_045768515.1 GTP pyrophosphokinase family protein -
  V471_RS05500 (V471_05420) - 1068042..1068878 (+) 837 WP_084871190.1 NAD kinase -
  V471_RS05505 (V471_05425) - 1068875..1069771 (+) 897 WP_084871191.1 RluA family pseudouridine synthase -
  V471_RS05510 (V471_05430) pta 1069785..1070768 (+) 984 WP_084871192.1 phosphate acetyltransferase -
  V471_RS05515 (V471_05435) amiA 1071005..1072975 (+) 1971 WP_014632817.1 peptide ABC transporter substrate-binding protein Regulator
  V471_RS05520 (V471_05440) amiC 1073509..1075002 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  V471_RS05525 (V471_05445) amiD 1075002..1075928 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  V471_RS05530 (V471_05450) amiE 1075938..1077023 (+) 1086 WP_037601740.1 ABC transporter ATP-binding protein Regulator
  V471_RS05535 (V471_05455) amiF 1077016..1077945 (+) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72643.94 Da        Isoelectric Point: 5.8640

>NTDB_id=178306 V471_RS05515 WP_014632817.1 1071005..1072975(+) (amiA) [Streptococcus salivarius strain ATCC 25975]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYSYVYQSDPETLDYVSTSKATTTDTVTNGVDGLLGYDKYGNLIPSVA
KDWTVSADGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADKKSEGIYLAKDSVVGLSDYLSGANKDFSKVGVK
ALDDYTLQYTLKQAEPYWNSKVTYSLFWPINEDFLKSKGNGFGKSTDPSSILYNGPFILKSLTAKSSIELTKNEHYWDKK
NVHFDNVKLSYYDGSDQESLERNFTDGVYSKARVFPTSSNYSSVEKEYKNDIFYTQPGPEIQGIGVNIDRQSYKHTAKKT
DIEKESTKKALLNKDFRQSVNFSIDRTAYSAQINGKAGAAQAIRNIFVKPEFVYAGDKSFGELVSEKLPSYGSEWSGINV
ADGQDGIYNTNKAKEKFEKAKAALQAEGVQFPIHLDFPVDESAKTAVARAQSVKQTVEEALGKENVVIDINQMSSDDLNN
ITYYASNAAAEDWDISNGVAWGPDYEDPSTYLDIFKTTASENTKTFMGFDDPNSAAAAKVGLKDYDTLVDAASKETNDLN
LRYERYADAQAWLTDSSLFMPTMVNSGAAPMISRMVPFSGAYSQIGNKGVDTYFKYLKPQKDVVTKKDYDSAREKWLKEK
KVSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=178306 V471_RS05515 WP_014632817.1 1071005..1072975(+) (amiA) [Streptococcus salivarius strain ATCC 25975]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATAGCTATGTTTATCAGTCTGATCCTGAGACATTGGACTATGTTTCTACTAGTAAGGCAA
CGACAACGGATACTGTAACAAATGGTGTTGACGGTCTTCTTGGTTATGACAAATATGGTAATTTGATTCCATCTGTTGCT
AAAGATTGGACAGTCTCTGCTGATGGTTTGACCTATACATATAAGATTCGTAAGGGTGTTAAGTGGTACACCTCTGATGG
AGAAGAGTACGCTGACGTTACTGCCAAGGACTTCGTGACTGGTCTTAAGCATGCAGCAGATAAAAAGTCAGAGGGGATAT
ATTTAGCAAAGGATTCAGTTGTCGGTTTATCAGACTACCTATCTGGTGCTAATAAAGATTTCTCAAAGGTTGGTGTTAAG
GCACTAGATGATTACACATTACAATACACATTAAAACAGGCGGAGCCATACTGGAATTCCAAGGTAACTTATTCGCTATT
TTGGCCAATCAATGAAGATTTTCTTAAGTCTAAAGGGAATGGCTTTGGAAAGTCAACGGATCCATCATCAATTCTTTATA
ACGGTCCTTTTATCTTGAAATCTCTAACGGCTAAATCGTCTATTGAGTTAACTAAAAACGAACATTATTGGGATAAGAAA
AATGTTCACTTTGATAATGTTAAATTATCTTATTATGATGGTTCTGATCAAGAATCATTAGAACGTAACTTTACAGATGG
TGTTTATAGTAAGGCGCGTGTCTTCCCAACGAGTTCTAATTATTCTTCTGTTGAAAAGGAATATAAAAATGATATTTTCT
ACACACAACCTGGACCAGAAATTCAGGGTATTGGGGTAAATATTGATCGTCAAAGTTACAAACATACTGCTAAAAAAACA
GATATTGAGAAAGAATCAACTAAAAAGGCCCTTCTTAACAAGGATTTCCGTCAGTCTGTTAACTTTTCTATTGACCGCAC
TGCTTACTCAGCTCAAATTAATGGTAAAGCTGGTGCTGCTCAAGCAATTCGTAATATCTTTGTCAAACCAGAATTTGTAT
ATGCAGGTGATAAATCATTTGGAGAATTAGTGTCTGAGAAATTACCTTCTTATGGTAGCGAATGGTCAGGTATTAATGTA
GCCGATGGACAGGATGGTATTTATAATACTAACAAGGCTAAAGAAAAGTTTGAGAAAGCTAAGGCAGCTCTTCAAGCAGA
AGGAGTTCAATTTCCTATCCATTTAGATTTTCCAGTTGATGAATCAGCGAAAACTGCTGTTGCACGTGCACAATCAGTGA
AACAAACTGTTGAAGAAGCTCTAGGTAAAGAAAATGTTGTTATTGATATTAATCAAATGTCTTCTGATGATTTGAATAAT
ATTACATATTATGCTTCAAATGCTGCCGCAGAGGATTGGGATATTTCAAATGGGGTAGCTTGGGGACCAGATTACGAAGA
TCCATCTACTTATCTGGATATTTTTAAGACAACAGCAAGTGAGAACACTAAGACATTTATGGGATTTGATGATCCAAATA
GTGCTGCTGCTGCTAAAGTTGGTCTAAAAGATTACGATACTTTGGTTGATGCTGCTTCAAAAGAAACAAACGACTTGAAT
CTTCGTTATGAACGATATGCAGATGCTCAAGCATGGTTGACAGATAGTTCTCTATTTATGCCAACGATGGTAAATAGTGG
TGCTGCCCCTATGATTTCTCGTATGGTTCCATTCTCGGGGGCTTACTCACAAATTGGAAATAAAGGAGTAGATACTTACT
TCAAGTATCTCAAGCCACAAAAAGATGTTGTTACTAAAAAAGATTATGATTCAGCTCGTGAAAAATGGCTTAAAGAGAAG
AAAGTGTCTAACGACAAGGCTCAAAAAGATCTTGCGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F3HDR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.61

100

0.756
  amiA3 Streptococcus thermophilus LMG 18311

73.973

100

0.741
  amiA3 Streptococcus thermophilus LMD-9

73.82

100

0.739

Multiple sequence alignment