Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   NX99_RS09645 Genome accession   NZ_CP015282
Coordinates   2058360..2060330 (+) Length   656 a.a.
NCBI ID   WP_060971833.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 27945     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2053360..2065330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS09630 (NX99_09475) - 2054077..2054973 (+) 897 WP_060971830.1 RluA family pseudouridine synthase -
  NX99_RS09635 (NX99_09480) pta 2054989..2055972 (+) 984 WP_084915446.1 phosphate acetyltransferase -
  NX99_RS09640 (NX99_09485) amiA 2056209..2058179 (+) 1971 WP_060971832.1 peptide ABC transporter substrate-binding protein Regulator
  NX99_RS09645 (NX99_09490) amiA 2058360..2060330 (+) 1971 WP_060971833.1 peptide ABC transporter substrate-binding protein Regulator
  NX99_RS09650 (NX99_09495) amiC 2060391..2061884 (+) 1494 WP_060971834.1 ABC transporter permease Regulator
  NX99_RS09655 (NX99_09500) amiD 2061884..2062810 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  NX99_RS09660 (NX99_09505) amiE 2062820..2063905 (+) 1086 WP_013990226.1 ABC transporter ATP-binding protein Regulator
  NX99_RS09665 (NX99_09510) amiF 2063898..2064827 (+) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72949.34 Da        Isoelectric Point: 5.2837

>NTDB_id=178252 NX99_RS09645 WP_060971833.1 2058360..2060330(+) (amiA) [Streptococcus salivarius strain ATCC 27945]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYIYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPSIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFNSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNLLVKPDFVYAGDKSFGDLVTEKMPSYGDEWSGVNL
KDSQDGLFNADKAKTEFNKAKEALQAQGVQFPIHLDLPVDQAAKPTVARAQSLKQSVEKTLGKENVVVDVHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=178252 NX99_RS09645 WP_060971833.1 2058360..2060330(+) (amiA) [Streptococcus salivarius strain ATCC 27945]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTTCTAAGTGTTGGGGTTTTAGTGGCTTGCTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATATTTATACTGCTGATCCTGAGACATTGGATTACCTTATTTCCAATAAAGGTT
CAACGACTGACGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAACGATAAATATGGTAACTTGGTACCTTCTATTGCC
AAGGACTGGACTGTTTCAGCTGATGGTTTGACTTATACTTACAAACTTCGTAAAGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCAGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGCGTTAAA
GCACTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTAAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATACATCCTTAAGTCGTTGACAGCTAAATCATCTATTGAGTTGGCTAAAAATGAAAACTACTGGGATAAGAAA
AATGTCCACTTCGATGGCATTAAACTTTCTTTCTATGATGCATCAGACCAAGAATCGCTTGTTCGTAATTTCACTGATGG
CGCTTATAGCCAAGCACGTCTATATCCAACAAGCTCAAACTTTAATTCAGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAAAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGATTTCCGTCAATCAGTTAACTTTGCTATTGACCGTAC
AGCTTATTCAGCACAACTTAATGGTGAAAAAGGTGCAGCACTTGCTGTTCGTAACCTTCTTGTGAAACCTGATTTTGTTT
ATGCTGGTGACAAGTCATTCGGTGATTTGGTAACTGAAAAGATGCCTTCATATGGTGACGAGTGGTCAGGTGTTAACCTT
AAAGACAGCCAAGATGGTCTCTTCAACGCTGATAAGGCTAAGACTGAATTTAATAAAGCTAAGGAAGCTCTCCAAGCACA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAGCTGCAAAACCAACTGTAGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTCGGAAAAGAAAATGTGGTTGTAGACGTTCATCAAATGTCTCAAGATGATCTTCTTAAC
AGTACTTTGTATGCAGCTAACGCAGCAGCAGAAGACTGGGATATCAATATTTCAGTTGCTTGGGCACCTGACTACGAAGA
CCCATCAACATTCCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTCGACGATCCTAACA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGATAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGTTATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTTAACAAGGG
TGCTGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCTTACTCTCAAGTGGGACCTAAGGGTTCTGACAGATACT
TTAAGTACCTTGAGCCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCCCGTGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.305

100

0.753
  amiA3 Streptococcus thermophilus LMG 18311

75.038

100

0.752
  amiA3 Streptococcus thermophilus LMD-9

75.038

100

0.752

Multiple sequence alignment